Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00651 ATGGCCGCCGCAAGAGTCTTAGCCAATGCCACCACCACCACCACCGCCGCCACCGCAGTCACCGCCTCCTCTTTTCTCTTCAAGACCTCCTTTCTTCCCAACCACACCCTCCCATTCAATTCCAATTTCATTTCCCTCTCCAGAAGACTCCCCTCCTCCAGAAAATCATTCTCCTGCAGAGCTTTGTACCTCCCTGAGATCAAGATCAAGGAGGAAGGCCAGCCTGAAACCCTCGACTATCGCGTCTTCTTCACTGACCAGTCCGGCAAAAAGGTCTCCCCTTGGCATGATATACCGCTGCATTTGGGGGATGGTGTTTTCAACTTCATTGTTGAAATTCCTAAAGAAACAAGTGCGAAGATGGAGGTTGCGACCGATGAGCCGTTCACTCCTATAAAGCAAGATACCAAAAAGGGGAAGCTTCGATACTACCCTTACAATATCAACTGGAATTACGGATTACTTCCACAAACATGGGAAGACCCATCCTTCGCTAACTCTGAAGTTGATGGTGCATTTGGAGACAATGATCCTGTTGATGTCGTTGAAATTGGTGAAAGTGATCGGAAGATAGGTGAGATTCTAAAAGTGAAACCACTGGCTGCTTTAGCTATGATTGATGAAGGGGAACTTGACTGGAAAATAGTTGCAATTTCACTTGATGATCCTAAAGCTTCATTAGTGAATGATATAGATGATGTCGAGAAACATTTCCCGGGAACTTTAACTGCTATAAGAGACTGGTTTAGAGACTACAAGATCCCTGATGGAAAGCCTGCTAACAAATTTGGTCTGGGAAACAAGCCTGCAAACAAGGATTATGCCCTTAAAGTTATTGAAGAGACCAACAAATCTTGGGCCAATCTCGTTAAGAGATCAATTCCTTCTGGTGAGCTCTCTCTTGTATAG 909 45.21 MAAARVLANATTTTTAATAVTASSFLFKTSFLPNHTLPFNSNFISLSRRLPSSRKSFSCRALYLPEIKIKEEGQPETLDYRVFFTDQSGKKVSPWHDIPLHLGDGVFNFIVEIPKETSAKMEVATDEPFTPIKQDTKKGKLRYYPYNINWNYGLLPQTWEDPSFANSEVDGAFGDNDPVDVVEIGESDRKIGEILKVKPLAALAMIDEGELDWKIVAISLDDPKASLVNDIDDVEKHFPGTLTAIRDWFRDYKIPDGKPANKFGLGNKPANKDYALKVIEETNKSWANLVKRSIPSGELSLV 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8230448 8234631 + Lsi03G006510.1 Lsi03g00651 658401

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00651 302 ProSitePatterns Inorganic pyrophosphatase signature. 175 181 - -
Lsi03g00651 302 Gene3D Inorganic pyrophosphatase 66 302 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Lsi03g00651 302 Pfam Inorganic pyrophosphatase 109 286 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Lsi03g00651 302 PANTHER INORGANIC PYROPHOSPHATASE 42 302 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Lsi03g00651 302 SUPERFAMILY Inorganic pyrophosphatase 68 298 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Lsi03g00651 302 PANTHER SOLUBLE INORGANIC PYROPHOSPHATASE 6, CHLOROPLASTIC-LIKE 42 302 - -
Lsi03g00651 302 CDD pyrophosphatase 105 284 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00651 K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] - csv:101207157 562.377
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00651 Lsi-Chr3:8230448 Lsi09g01707 Lsi-Chr9:25622732 3.09E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g830 . Blo03g00046 Bda06g01142 . Bpe07g00302 . Bma05g00627 Bma12g00318 Cmo19g00522 Cmo11g01443 . . . . Sed06g0813 Cpe04g00346 Cpe15g00404 Bhi05g00978 Tan02g1096 Cmetu01g2563 Lac12g0119 Hepe02g0683 . . . . . . . . . . . Cone3ag1063 Cone10ag1078 Lsi03g00651 . . . . . . . . Bpe05g00451 . . . . . Cma11g01683 Cma19g00509 Car11g01159 Car19g00382 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004500 2 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00651 Lsi_Chr03 FPKM 4.46414 4.301609 18.092079 16.890608 27.315649 28.796062 27.762388 15.710443 13.095324 12.716592