Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00654 ATGAGTTTAGGTAATATGTTGGAGCCTGTTAGTTGCTGCCAGAGCTCCCAGTCCCAGATTTATAGTGCAGTTAAACAGAAGAATCCTTTGAGGGCCTACTCTCATACTGTTCATCAACTTTGTGGATCTTCCTTCAACTTACATTATTCACACTCTAAGAAAGTGACTGTTCCATCATGCAGCATAAATTGCTGGAGGAATGATTATTCTTTAGTCCCTGTACTTTTTCACAATGGTGCTACTACGTTAACATTCAAAATAGTTGAACAGAACGGATACAATTGGTCTAATCATAGGCCTAAACAGAGGAAAAGATTAAGAATTCGTGCAGCTCTTGATGTTGCAGCTGCTGTTGACGTCATCAATGATTTAGGATTGGATACATTGACATTCCTAGCTGTGACTGTCATAGTCGTCCCTCTATTTAGGAGAATTAAGGCTAGCCCTATACTTGGTTTCTTCTTTGCTGGGATTGTACTTAATCAATTTGGCGTGATCAGAAATATAATAGATGTTAAACTTTTGTCCGAATGGGGAATACTTTTCCTGCTATTTGAGATGGGTTTGGAGCTTTCATTTGCACGTCTAAAGGCTCTTGCAAGGTTTGCTTTTGGCATGGGTTTGACACAGGTCATATTATCTACTATCGCTTTCACAGCATTTGAACTTCCCCCAAATGGGGCTATTGGAACAAGAATTTTGGAGTTCCTTTTTCACGCCAGATCTGACTTGGTTAACATCAGAAGCGTTGATGAAGCTATTGTGATTGGTGCTGCCCTTTCTCTATCTTCTTCAGCTTTTGTTTTACAGCTTCTTGCAGAGAAAGGAGAGCTTGCGACAAGATTTGGCTCAGCAACTCTAGGGATACTTCTTCTTCAGGATATTGCTGTTGTCCCTCTCTTGGTCGTACTTCCAGTTCTTGAGAGCCAGAATTTGGGCTCTGAAAGTATCTGGCCAATGCTCGCACAAGAAAGTTTGAAGGCTTTAGGTGGACTGGGTCTGCTGTCCCTTGGGGGAAAGTTGATTCTTAGGCGAGTTTTTGAGAGAGCAGTCAAAATTCAGGTTGTTGCGGAAGCAAGAAGTTCAGAGGCTTTTGTGGCCCTTTGCCTGCTGACTGTTGCCGGCACTTCACTAATCACTCAGAAATTGGGCTTTAGTGATACGCTGGGAGCATTTTTGGCTGGGGCAATATTAGCAGAAACCAATTTCCGGACGCAAATTGAAGCAGACATTCGGCCATTTAGGGGCTTGCTCCTTGGGTTATTCTTTGTTACCACAGGGACCTCCATTGATATTCAGAAGGTACCGAAGGCTGTTACACACCAATATTTTATGAGTTTTATGGGTAGATTAGTGAGCACTGGAAGAGTGCACTCCTTTTGGCTTAAAGCTCCTGTTCCGAGAATGGCCAAATGTTCTTGCACTTTTGGCAGGTTTAATAGCAATCAAGACCCTTATAATAACAGCAATAGGCTTGGAGTGCTTCCACTCGAGTTAAACAAGCTGCTCATCATTATTGTTGTCTTGTCAATGGCTCTAACCCCCTTGCTTAATGAAGCTGGACGAAAGGCATCTGAATTCATCAGCGAAAAGTACAAGACAGAGGATAAAGCTGCAGATACAGTGAATTTTGATGCTACTGAACCTGTTGTCATTGTTGGATTTGGACAAATGGGTCAGGTTCTGGCAAATTTCTTATCTACACCTTTGGCATCTGGGCTAGATGGCAATACTCCTGGATGGCCATATGTAGCATTTGACATCGACCTTTCCGTAGTGAAGACATCTAGGAAGCTTGGTTTTCCTGTTCTGTATGGAGACGGATCACGACCAGCAGTTCTGCAATCTGCTGGAATCTCTTCCCCAAAAGCTGTCATGGTTATGTTCACAGAGAAGAAGGCAACGATTGATGCTGTTCAAAAGCTCCGACTTGCATTCCCAGCTATCCCAATTTATGCACGAGCTAAGGATGTGGTGCATCTATTAGATTTAAAGACCGCAGGTGCGACGGATGCCATTTTGGAAGATGCTGAGACTAGTTTACAACTTGGGTCAAAGCTTTTGAAAGGGCTCGGAGTTATGTCTGACCAAGTGTCTTTCCTCAGTCAAATGGTTCGAAATTCTATGGAAATACAAGCTCAAGATGCCCTCGACAAATCCAATGAGCAAGAGTTGGAGATTATGAAACCGCTGCAGATACGTGTCAAGGACTCAATCGAGTCCCCCGAGAACGAACTGTCGAGGCTGAAACGGGAAGATAGTACTCAAATCTTAAATGGAAAAAAGGTAGATCAGATGAAGCAAGATACTGTTTTCCAGAAGGCTGAAGATTTAGATGGAAATGGAGTCCTATACTGTGAACTTGAAACAGAGAACAACTTTCTAGAGCAAAATGTGGTAGAGCCACCAACCCACATAACAGCCACTGATGGTTTAGAAAAGTGA 2445 42.86 MSLGNMLEPVSCCQSSQSQIYSAVKQKNPLRAYSHTVHQLCGSSFNLHYSHSKKVTVPSCSINCWRNDYSLVPVLFHNGATTLTFKIVEQNGYNWSNHRPKQRKRLRIRAALDVAAAVDVINDLGLDTLTFLAVTVIVVPLFRRIKASPILGFFFAGIVLNQFGVIRNIIDVKLLSEWGILFLLFEMGLELSFARLKALARFAFGMGLTQVILSTIAFTAFELPPNGAIGTRILEFLFHARSDLVNIRSVDEAIVIGAALSLSSSAFVLQLLAEKGELATRFGSATLGILLLQDIAVVPLLVVLPVLESQNLGSESIWPMLAQESLKALGGLGLLSLGGKLILRRVFERAVKIQVVAEARSSEAFVALCLLTVAGTSLITQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGTSIDIQKVPKAVTHQYFMSFMGRLVSTGRVHSFWLKAPVPRMAKCSCTFGRFNSNQDPYNNSNRLGVLPLELNKLLIIIVVLSMALTPLLNEAGRKASEFISEKYKTEDKAADTVNFDATEPVVIVGFGQMGQVLANFLSTPLASGLDGNTPGWPYVAFDIDLSVVKTSRKLGFPVLYGDGSRPAVLQSAGISSPKAVMVMFTEKKATIDAVQKLRLAFPAIPIYARAKDVVHLLDLKTAGATDAILEDAETSLQLGSKLLKGLGVMSDQVSFLSQMVRNSMEIQAQDALDKSNEQELEIMKPLQIRVKDSIESPENELSRLKREDSTQILNGKKVDQMKQDTVFQKAEDLDGNGVLYCELETENNFLEQNVVEPPTHITATDGLEK 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8274147 8284603 - Lsi03G006540.1 Lsi03g00654 658404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00654 814 Gene3D - 123 526 IPR038770 -
Lsi03g00654 814 Pfam Sodium/hydrogen exchanger family 131 435 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Lsi03g00654 814 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 89 435 - -
Lsi03g00654 814 Gene3D - 549 719 - -
Lsi03g00654 814 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 89 435 - -
Lsi03g00654 814 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 489 767 - -
Lsi03g00654 814 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 549 687 IPR036291 -
Lsi03g00654 814 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 489 767 - -
Lsi03g00654 814 ProSiteProfiles RCK N-terminal domain profile. 549 681 IPR003148 GO:0006813
Lsi03g00654 814 Pfam TrkA-N domain 550 673 IPR003148 GO:0006813
Lsi03g00654 814 Coils Coil 706 726 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00654 Lsi-Chr3:8274147 Lsi05g02021 Lsi-Chr5:27221054 5.04E-55 dispersed
Lsi03g00654 Lsi-Chr3:8274147 Lsi08g01579 Lsi-Chr8:23818752 2.40E-19 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00654 - - csv:101209266 1284.24