Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00657 ATGGCGGCGGCTGTGGGGGGTTTGAAGACGTGCTTTGCCCGACCGAGTGTTGAATTCATTGCTCCTTCAACGTCGTATTCTGCTCCGGTGCGTGTGTTCTTCAAGCCCTTTAAGGGTACGAGAGTTGTGTTGAAGAAGGGAAGTTCTTGGGGTCCCAGGTGCGAGATCGATCCCAATTCCACCTCGGCTCGAAGCGATCTGATTGGTTCGAATGCACCTGGTCTTTCGGCTCTTGAATTGCTTAAGACGTCTTCAGTTAATAGATATACAAGAGAAAGGAGCAGTATTGTGGTGATTGGTCTTAATGTTCACACTGCACCAGTAGAGTTGCGTGAGAAACTTGCCATTCCAGAAGCTCAATGGCCTCAGGCCATTGGTGAACTTTGTGCTCTGAACCATATAGAAGAAGCTGCTGTTCTTAGTACTTGTAATCGGATTGAGATTTACGTTGTAGCATTGTCGCAGCATCGTGGGGTTAAAGAAGTGACAGAATGGATGTCCAAGAGAAGTGGAATTCCTATTTCAGAGCTTTGTAAGCATAGGGTTCTGTTATACAATAACGATGCAACTCAGCACCTCTTTGAAGTTTCTGCGGGTCTTGACTCTCTTGTGCTTGGAGAAGGTCAAATTCTTGCTCAGGTGAAACATGTTGTTAAGACAGGGCAAGGTGTAGCTGGTTTTGACAGAAAAATTAGTGGGTTGTTCAAGCATGCAATCAGTGTCGGAAAGCGAGTTAGAACCGAGACCAACATTTCCTCAGGGTCGGTTTCTGTCAGTTCGGCTGCTGTGGAGCTCGCACAGAAGAAACTTCCAGAATCTTCATATGCTACTGCAAAAGTGATGGTAGTTGGTGCAGGAAAAATGGGGAAACTTGTGATCAAACACTTGGTTGCAAAGGGATGTAGGAAGATGGTGATTGTGAACAGAACTCACGACAGTGTCGATGCTCTAAGTAAGGAACTCAAAGATGTTGAGATAATCTACAAACCCCTCTCAGAGATTTTAGCATGTGCTGCTGAGGCGGATGTCATCTTCACCTGCACCGCTTCAAAAACACCCTTATTTATGAAAGAAGATGTAGCTATGCCCCCCCCTGCACATACAGAAACAGGAATACGTTTATTTATCGATATATCAGTTCCGAGGAATGTCGAGCCATGCATATCAGATCTTGAGACCGTGTCTGTTTTCAACGTGGACGATCTCAAGGAAGTTGTGGCTGCTAACAAGGAGGATAGACTGCAGAAAGTTCAGGAGGCTCAGTCGATAATCGCAGAAGAAATAAACAAATTTGAAGCTTGGAAGGATTCCCTTGAAACTGTTCCTACAATCAAGAAGTTTAGAGCTTATGTTGAGAGGATTAGGGCTGCTGAACTAGACAAATGTTTGTCCAAGATGGGTGAAGACATCCCAAAGAAAAAGAAAGTAGCCATTAATGATCTTAGCTTGGGTATAGCTAACAAACTACTTCATGGTCCAATACAGCACTTAAGATGCGATGGCAATGATAGCCGGACGTTGGATGAAATACTTCAGAATATGCATGCTATTAACAGAATGTTTGATCTTGAGACAGATTTGTCCGTCTTGGAAGAGAAGATTAGAGCAAAAGTTGAACGTGGCCAGAAGTAG 1632 44.24 MAAAVGGLKTCFARPSVEFIAPSTSYSAPVRVFFKPFKGTRVVLKKGSSWGPRCEIDPNSTSARSDLIGSNAPGLSALELLKTSSVNRYTRERSSIVVIGLNVHTAPVELREKLAIPEAQWPQAIGELCALNHIEEAAVLSTCNRIEIYVVALSQHRGVKEVTEWMSKRSGIPISELCKHRVLLYNNDATQHLFEVSAGLDSLVLGEGQILAQVKHVVKTGQGVAGFDRKISGLFKHAISVGKRVRTETNISSGSVSVSSAAVELAQKKLPESSYATAKVMVVGAGKMGKLVIKHLVAKGCRKMVIVNRTHDSVDALSKELKDVEIIYKPLSEILACAAEADVIFTCTASKTPLFMKEDVAMPPPAHTETGIRLFIDISVPRNVEPCISDLETVSVFNVDDLKEVVAANKEDRLQKVQEAQSIIAEEINKFEAWKDSLETVPTIKKFRAYVERIRAAELDKCLSKMGEDIPKKKKVAINDLSLGIANKLLHGPIQHLRCDGNDSRTLDEILQNMHAINRMFDLETDLSVLEEKIRAKVERGQK 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8315621 8318382 + Lsi03G006570.1 Lsi03g00657 658407

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00657 543 Pfam Shikimate / quinate 5-dehydrogenase 264 405 IPR006151 -
Lsi03g00657 543 PANTHER GLUTAMYL-TRNA REDUCTASE 20 543 - -
Lsi03g00657 543 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 95 251 IPR036343 GO:0008883|GO:0033014|GO:0050661
Lsi03g00657 543 TIGRFAM hemA: glutamyl-tRNA reductase 96 504 IPR000343 GO:0008883|GO:0033014|GO:0050661
Lsi03g00657 543 Hamap Glutamyl-tRNA reductase [hemA]. 95 521 IPR000343 GO:0008883|GO:0033014|GO:0050661
Lsi03g00657 543 Gene3D - 255 406 - -
Lsi03g00657 543 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 99 249 IPR015895 GO:0008883|GO:0033014|GO:0050661
Lsi03g00657 543 ProSitePatterns Glutamyl-tRNA reductase signature. 192 215 IPR018214 GO:0008883
Lsi03g00657 543 Gene3D - 94 254 IPR036343 GO:0008883|GO:0033014|GO:0050661
Lsi03g00657 543 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 20 543 - -
Lsi03g00657 543 CDD NAD_bind_Glutamyl_tRNA_reduct 96 417 - -
Lsi03g00657 543 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 419 523 IPR015896 GO:0008883|GO:0033014|GO:0050661
Lsi03g00657 543 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 254 413 IPR036291 -
Lsi03g00657 543 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 417 505 IPR036453 GO:0008883|GO:0033014|GO:0050661
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00657 K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] - csv:101208135 907.516
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00657 Lsi-Chr3:8315621 Lsi08g01050 Lsi-Chr8:19105248 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g877 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi03g00657 Csa07g00638 . Cme01g00165 . . . . . . . . . . . . . . . . . . . . . . . . Cla09g01608 Cam09g1542 Cec09g1771 Cco09g1855 . . Cre01g0789 . . Chy01g00173 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014173 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 0 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00657 Lsi_Chr03 FPKM 10.783208 10.823632 8.550068 8.214948 8.374309 8.748094 10.339519 6.046758 5.862529 6.532472