Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00681 ATGTCTCCCATGGAGGTCTCAATTCTCACCTCTCCAAACCTTTTCCTACTCATCTTCTTCTACTATAACTTCTTGTGGAGCCTAACCAACCCAGGTTCAGTCTCAGCCACCATTTCTTATGAGAACTTAACATTCAGCCTCGTTGATTTCGACCCAAACGGCCACAACATTCATTATGAAGGAAATGCATACCCTTCCAACAATGTCATTCAGCTTACCATGAACCAGAGAGACATGCCTCCCAATGGAAGCGTTGGTCGTGCAACCTACAAAGATTCTCTCCATCTCTGGGAGAGTGGCCACAGGAATCTTGCGGACTTCACCACCCACTTCTCCTTCACAATTGACTCACAGCACAGTCACACTTATGGCGACGGCTTTGCCTTCTTTATCGCCTCTAACGATTCAAGGCTTCCACCTTACTCAGGAGGTGGCAACTTTGGTCTCTTGAGTTCCAACATGAGTGATCCAGATTCGGGGAATCACATCGGCATTGATGTCGGCTCTGTTAAATCTCTGACCTCTACTTCATGGTGGTGGAGTGACATAGAAAATGGTGGAAAAGTTCGAGCAGAGATAAGTTACAACTCAAGCTCCCACAATTTGACTGTTTACTTGGTTGATGAAAGAGATTCTGAAGTTTCTCCGACGAACTCGTCTAGTTTTTCTTTCAATATTGATTTGAGAGAGTATTTACCAGAATGGGTAACAATTGGCTTTTCAGGATCAACCGGATCTTTCTTCGAGATTCATACAATTAGCTCGTGGAGTTTCAGCTCTAGATTACAAATTGAAGTCAATGTTACCACCACAACTGATCCAGCTAGCTCTCCTGTTAACTCCAAGAAAGGAATCAACATGAAATGGTTCGGGATAATCTTTGCCATGGCACTTTCACTCTTTCTAATTTTGGGGTTTGCTTGGTTTTGGATATGGATGAGGAGAAGTAGCAGAAGAAAAAGTATGAGAAGGAACCAAGAGGAAGATTTTGAGAACGAAACAGGGCCAAGGAAGATTTCATATAAAGACCTATTAGCAGCAACCAACAAGTTCAGTGATGAAAATGTGTTGGGACAAGGAGGGTTTGGCAAAGTATACAGAGGGTTTCTAGACAACAAGGAACTTGATGTGGCAGTGAAGAGAATCACCCCAAACAATCTCCATCAAGGGTCAAGAGAGTTTGCATCAGAAGTGAAAACAATCAGCAAATTAAGACACAAGAACTTAGTAGAGCTAATTGGGTGGTGCTGCAACAAACACCAAGAATATCTCATAGTCTACAAATTCATGCCTAACAAGAGCTTAGATTTCCACCTCTTTCAGCAAAACAACCTCCTAACATGGGATCACAGGTACAAAATCACAATAGGTTTGGCCTCAGCACTACACTATCTACAAGAAGAACAAGATCCATACATACTACACAGAGACATAAAATCAAGCAACATCCTCTTAGACGGTGAATTCAACGCCAAACTTGGCGATTTCGGGCTGGCTAAGCTCGTCGATCATGGAAAACAATCAGTAACCACCATACTACGAGGAACAGAAGGTTACGTCGCACCAGAGTACCTGGAAAGCAGCGTGGCAAGTAAAGAATCCGACATATACAGCTTCGGCATCGTGTGCTTGGAAATCGCCTGCGGAAAACAAGCCCTAGGTGAAGCCAGAGAAGACGGGAAGAAATGTTTGATAAAACTGGTTGAATGGGTTTGGGATTATTACCGAAGAAGGAGTGTGATTGAGGCTGCCGACCCGAAATTGCGCCAAAATTTCAAGAGAGAAGAGATGAAACAACTGTTGATCGTCGGACTTGCCTGTGCTCAGCCGGATTTCTGTCTGCGGCCTTCCATCAAACAGGTGATCGACATGCTTAACTTCAAATCGCCATTGCCGAATCTGCCATTGGGATATCCAGGATTATCGAGATCTGCAGTGTTTTTGAGTGCGGAAATGGAATCGTTACGAACATCGTCGAGTTTACAGAGCGGAAATCTTCATGGCAAAAGCATTTCTTCTAAGAATTCCACTGCTTCTTCTACTTTTTCGAATTTGGGCTAA 2061 43.52 MSPMEVSILTSPNLFLLIFFYYNFLWSLTNPGSVSATISYENLTFSLVDFDPNGHNIHYEGNAYPSNNVIQLTMNQRDMPPNGSVGRATYKDSLHLWESGHRNLADFTTHFSFTIDSQHSHTYGDGFAFFIASNDSRLPPYSGGGNFGLLSSNMSDPDSGNHIGIDVGSVKSLTSTSWWWSDIENGGKVRAEISYNSSSHNLTVYLVDERDSEVSPTNSSSFSFNIDLREYLPEWVTIGFSGSTGSFFEIHTISSWSFSSRLQIEVNVTTTTDPASSPVNSKKGINMKWFGIIFAMALSLFLILGFAWFWIWMRRSSRRKSMRRNQEEDFENETGPRKISYKDLLAATNKFSDENVLGQGGFGKVYRGFLDNKELDVAVKRITPNNLHQGSREFASEVKTISKLRHKNLVELIGWCCNKHQEYLIVYKFMPNKSLDFHLFQQNNLLTWDHRYKITIGLASALHYLQEEQDPYILHRDIKSSNILLDGEFNAKLGDFGLAKLVDHGKQSVTTILRGTEGYVAPEYLESSVASKESDIYSFGIVCLEIACGKQALGEAREDGKKCLIKLVEWVWDYYRRRSVIEAADPKLRQNFKREEMKQLLIVGLACAQPDFCLRPSIKQVIDMLNFKSPLPNLPLGYPGLSRSAVFLSAEMESLRTSSSLQSGNLHGKSISSKNSTASSTFSNLG 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8641436 8643557 - Lsi03G006810.1 Lsi03g00681 658431

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00681 686 SUPERFAMILY Concanavalin A-like lectins/glucanases 44 263 IPR013320 -
Lsi03g00681 686 ProSiteProfiles Protein kinase domain profile. 351 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g00681 686 Pfam Protein kinase domain 352 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g00681 686 Gene3D Phosphorylase Kinase; domain 1 312 429 - -
Lsi03g00681 686 Gene3D Transferase(Phosphotransferase) domain 1 430 636 - -
Lsi03g00681 686 Gene3D - 22 152 - -
Lsi03g00681 686 Gene3D - 153 288 - -
Lsi03g00681 686 ProSitePatterns Legume lectins alpha-chain signature. 232 241 IPR000985 -
Lsi03g00681 686 MobiDBLite consensus disorder prediction 659 686 - -
Lsi03g00681 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Lsi03g00681 686 SMART serkin_6 351 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g00681 686 Pfam Legume lectin domain 43 267 IPR001220 GO:0030246
Lsi03g00681 686 CDD STKc_IRAK 357 626 - -
Lsi03g00681 686 PANTHER - 56 639 - -
Lsi03g00681 686 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IX.1-LIKE 56 639 - -
Lsi03g00681 686 ProSitePatterns Protein kinases ATP-binding region signature. 357 380 IPR017441 GO:0005524
Lsi03g00681 686 SUPERFAMILY Protein kinase-like (PK-like) 330 629 IPR011009 -
Lsi03g00681 686 CDD lectin_legume_LecRK_Arcelin_ConA 43 262 IPR001220 GO:0030246
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00681 - - - csv:101209022 1209.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00681 Lsi-Chr3:8641436 Lsi05g00796 Lsi-Chr5:11636923 4.02E-165 dispersed
Lsi03g00681 Lsi-Chr3:8641436 Lsi03g00683 Lsi-Chr3:8669570 6.17E-167 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g905 . Blo03g00035 Bda06g01133 . . . . . Cmo19g00508 Cmo11g01451 . . . . . Cpe04g00360 Cpe15g00386 Bhi05g00956 . . . . . . . . . . . . . . . . . Lsi03g00681 Csa07g00619 . Cme01g00179 . . . . . . . . . . . Cma11g01676 Cma19g00490 Car11g01167 Car19g00367 . . . . . . . . . Cla09g01596 . . . . . . . . Chy01g00189 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013790 0 1 0 0 0 1 1 1 1 1 1 1 1 0 0 1 1 0 1 1 1 2 1 0 0 1 1 0 1 0 20
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83473 PF00069 Pkinase 3.40E-45 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00681 Lsi_Chr03 FPKM 8.211061 9.461699 5.998864 6.464555 17.876871 18.647587 16.359102 5.835888 5.538043 4.989573