Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00683 ATGGCTGCCCAAATCTCGATTTCCAATTTTCTTCTTTATTTCTTCTTCCTGGTTACATTCTTTCCTCCATTTACAATTGCAACTACTTCTTTATCTTTTAGTTTCACCTCTTTCGATTCGAGTAATCCCAACATCTTCTATGAGAGAGCATTCTCATCAAACCATTCAATTGAGCTCACTGGAAGTTGGGATAACAAGTACACAAGCTCCGCTGGACGAGCTACATACTTCCAACCATTTCATCTTTGGGACAAACCCTCAAGAAATCTATCAAGTTTCCAAACCAATTTTTCCTTTTCTATCAATTCCAGAGGAAGCAAAATTTATGGAGATGGGCTTACCTTTTTCTTGGCTCCTAATGGTTCTAAGCTCAACGATGATATTGCTAAAGGGGGTGGATTGGGTATTGGCATCAATGACCACGTATTCAACACGACTAAACATTCTTTTCTTGCAGTTGAGTTTGATACCTTCCACAACCCTAACTATCAAGATCCAATCTCAGAACATGTAGGTATTGATATCAATTCTATGATTTCTGTTGCTTCTATGATATGGAAATGTGATATCCCGGGTGGGAAGATGTATAATGTTTGGATTGATTATGATTCTGTTACTCACAATTTGAGTGTTACTTTTACTGGGTTTGAGAATAACAATACTGTATTGCAAAATCTTCACTCTGTTATAGACTTGAGATTGAATTTATCTGAATGGGTTACTTTTGGTTTCTCTGCTGCAACTGGAGACCTATTTGAAACACATACCATATATTCTTGGGATTTTAAGTCAACGCTCAACTTGGCCAATAATTCCTTTGTGATTCCAAGTCCTAAGGTTCATACTACTGTGCCCCCAAGTCCTAGTCATGATCATAGCAAGGTAGGTCTAGTAGTTGGATTATGTGTTGGTGTATTTGTCTTGGTGAGTGGATTGTTCATAGTTTGGATAATGTTTTGGAGGAAGAAGAAGATGATGAAATTGAATATGGATGAGGATATTGTGTTGGATGATGGTGAATTTGAACGAGAAACAGGACCTCGAAAGTTTTCATATAATGAATTGGCTCGTGCGACAAATCATTTTAGGGAGGATGAGAAGCTTGGTGAAGGTGGATTCGGTGGTGTTTATAGAGGTTTCTTAAGGGACTTGAATTGCTATGTTGCTGTGAAGAAAGTATCAAAAGGGTCTAAACAAGGACTGAAAGAGTATGCATCTGAGGTGAAAATCATTAGTCAATTGAGACATAGAAACTTGGTGCAACTCATTGGTTGGTGTCATGAAAGAGGTGAGCTCTTGCTGGTTTATGAATTCATGTCAAATGGAAGCTTAGATGCCCATCTTTTCAAAGAAAACAACTTCTTAACATGGGAATTTCAATACAAAGTTGCTCGAGGAATTGCCTCGGCTCTGCTATATCTACATGAAGAGTGGGAAAAATGTGTGCTACATAGAGATATAAAGTCGAGCAATGTAATGTTGGATTCAGATTTCAATGCAAAGCTTGGAGATTTTGGGTTGGCTAGGCTAGTGGAGCATGCCGTAGGTTCACAAACAACAGTTCTTGCTGGCACAATGGGCTACATGGCTCCTGAATGTGCTACAACAGGAAGAGCCAGTAAGGAATCAGATGTATTCAGTTTTGGGATTGTGGCTTTGGAAATTGCTTGTGGAAGAAGACCCTTTAACCCCAATGTAGAGGAAGGCAAAATGGTGATGGTAGAGTGGGTTTGGGAGCTTTATGGCCATGGAAAGCTTCTTGAAGCAGCCGACTCGAAACTCCATGAAAGCTTTGCAGATGAAGCTCAACAGCAACAACAGATTGAGTGTTTGATGGTTGTTGGTCTGTGGTGTGCTCATCCAGATATAAATTGCAGACCATCAATAAGACAAGCAATTCATGTGCTAAACTTTGAAGCTCCATTACCTGTTCTTCCTTTACAGTTCCCTACACTTGCATATCATCCGCGTCCCTTCAAAGGACAGATTGATTCTTCTTCATTTTCATCGTTTCAAGATGGTGTTGTTTCTCAAATTGGTGATGTATTAACTAGTTCTTCACAGGGGACTACATCTACTTCAACTTCTTTTTCTGCATCTACTTCACTTTTGAGTACAAGGTAA 2124 39.27 MAAQISISNFLLYFFFLVTFFPPFTIATTSLSFSFTSFDSSNPNIFYERAFSSNHSIELTGSWDNKYTSSAGRATYFQPFHLWDKPSRNLSSFQTNFSFSINSRGSKIYGDGLTFFLAPNGSKLNDDIAKGGGLGIGINDHVFNTTKHSFLAVEFDTFHNPNYQDPISEHVGIDINSMISVASMIWKCDIPGGKMYNVWIDYDSVTHNLSVTFTGFENNNTVLQNLHSVIDLRLNLSEWVTFGFSAATGDLFETHTIYSWDFKSTLNLANNSFVIPSPKVHTTVPPSPSHDHSKVGLVVGLCVGVFVLVSGLFIVWIMFWRKKKMMKLNMDEDIVLDDGEFERETGPRKFSYNELARATNHFREDEKLGEGGFGGVYRGFLRDLNCYVAVKKVSKGSKQGLKEYASEVKIISQLRHRNLVQLIGWCHERGELLLVYEFMSNGSLDAHLFKENNFLTWEFQYKVARGIASALLYLHEEWEKCVLHRDIKSSNVMLDSDFNAKLGDFGLARLVEHAVGSQTTVLAGTMGYMAPECATTGRASKESDVFSFGIVALEIACGRRPFNPNVEEGKMVMVEWVWELYGHGKLLEAADSKLHESFADEAQQQQQIECLMVVGLWCAHPDINCRPSIRQAIHVLNFEAPLPVLPLQFPTLAYHPRPFKGQIDSSSFSSFQDGVVSQIGDVLTSSSQGTTSTSTSFSASTSLLSTR 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8669570 8671693 - Lsi03G006830.1 Lsi03g00683 658433

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00683 707 SMART serkin_6 362 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g00683 707 CDD lectin_legume_LecRK_Arcelin_ConA 42 266 IPR001220 GO:0030246
Lsi03g00683 707 PANTHER - 20 694 - -
Lsi03g00683 707 Gene3D Phosphorylase Kinase; domain 1 347 438 - -
Lsi03g00683 707 SUPERFAMILY Concanavalin A-like lectins/glucanases 28 266 IPR013320 -
Lsi03g00683 707 ProSitePatterns Protein kinases ATP-binding region signature. 368 392 IPR017441 GO:0005524
Lsi03g00683 707 MobiDBLite consensus disorder prediction 684 707 - -
Lsi03g00683 707 ProSitePatterns Legume lectins beta-chain signature. 151 157 IPR019825 -
Lsi03g00683 707 ProSitePatterns Legume lectins alpha-chain signature. 236 245 IPR000985 -
Lsi03g00683 707 CDD STKc_IRAK 368 637 - -
Lsi03g00683 707 Gene3D Transferase(Phosphotransferase) domain 1 439 652 - -
Lsi03g00683 707 Pfam Legume lectin domain 30 269 IPR001220 GO:0030246
Lsi03g00683 707 SUPERFAMILY Protein kinase-like (PK-like) 347 672 IPR011009 -
Lsi03g00683 707 Gene3D - 28 274 - -
Lsi03g00683 707 ProSiteProfiles Protein kinase domain profile. 362 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g00683 707 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IX.1-LIKE 20 694 - -
Lsi03g00683 707 Pfam Protein kinase domain 362 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g00683 707 ProSitePatterns Serine/Threonine protein kinases active-site signature. 482 494 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00683 - - - csv:101208539 949.503
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00683 Lsi-Chr3:8669570 Lsi05g00796 Lsi-Chr5:11636923 0 dispersed
Lsi03g00681 Lsi-Chr3:8641436 Lsi03g00683 Lsi-Chr3:8669570 6.17E-167 proximal
Lsi03g00683 Lsi-Chr3:8669570 Lsi03g00684 Lsi-Chr3:8688781 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g907 . . . . . . . . Cmo19g00505 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi03g00683 Csa07g00618 . Cme01g00183 . . . . . . . . . . . . Cma19g00488 . Car19g00365 . . . . . . . . . . . . . . . . . . Chy01g00191 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000150 2 7 3 2 2 5 6 4 4 9 8 5 7 10 9 7 6 7 5 4 9 4 4 5 5 9 3 2 3 2 158
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83474 PF00069 Pkinase 5.80E-51 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00683 Lsi_Chr03 FPKM 3.28853 4.278109 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0