Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00690 ATGTTGCAGTCTTCGATTCGGCGAGTAAAAAAATTGAATGTTCTGAGGCCTCAGATCTTTGCTCTTGGAAATTCTCGTTTCTCCACCTTTGCTGAACCGTCTTCCAAGCCTAATCCTCCGAGGGTTCCAAATCTCATAGGAGGGACTTTTGTTGATTCTCAATCCTCTGCATTCATAGATGTCATAAACCCAGCAACACAAGAAGTTGTTTCTCAAGTACCATTGACCACAAATGATGAATTTAACGCTGCAGTGTCTGCAGCAAAGCAGGCTTTTCCTGCATGGCGTAATACTCCAGTTACAACTCGTCAACGAATTATGTTCAAGCTTCAAGAACTTATTAGGCGAGATATAGACAAACTTGCTCTGAATATTACCACAGAACAAGGAAAAACACTAAAGGATGCACATGGAGATGTATTCCGTGGGCTAGAGGTTGTGGAACATGCATGTGGAATGGCATCTCTGCAAATGGGGGAGTATGTCTCTAATGTGTCACATGGAATTGATACGTACAGCATCAGAGAGCCTCTTGGTGTTTGTGCTGGGATTTGTCCGTTCAATTTTCCCGCCATGATCCCCCTATGGATGTTCCCAGTTGCTGTTACATGTGGGAATACCTTTGTCTTGAAGCCTTCAGAAAAAGATCCAGGGGCTTCTATAATCCTTGCAGAGTTAGCAATGGAGGCTGGATTGCCTAATGGTGTCCTAAATGTGGTTCATGGTACTAATGATGTTGTTAATGCCATTTGTGATGATGAAGATATAAAAGCAATATCATTTGTTGGTTCAAACATTTCCAATATGGGTGCAAAAAATCATGCAATTGTCTTGCCCGATGCCAGCATAGATGCTACTTTGAATGCTTTGGTTGCTGCTGGTTTTGGTGCTGCTGGACAAAGGTGCATGGCACTTAGTACAGTTGTCTTTGTTGGAGACTCCAAGTTCTGGGAGGATAAACTTGTAGAACGTGCCAAAACTCTGAAGGTAAACTCTGGAACAGAACCTGATGCAGATCTTGGTCCAGTAATTAGCAAGCAGGCAAAGGATAGGATTCACAGATTGGTTCAATCTGGCATCGATAGTGGAGCCAGGCTACTGCTAGATGGGAGAAATATAGTGGTTCCTGGATACGAGCAAGGAAATTTTATTGGCCCTACTATCTTAACAGATGTGACGCCGGACATGGAGTGCTACAAGGAAGAAATATTTGGCCCAGTTCTGCTTTGCATGCAGGCTGGAAGTTTAGAGGAGGCCATTAGCACCGTTAACAGAAATAGGTATGGCAATGGAGCTTCTATATTCACCACATCTGGGATAGCGGCTAGGAAGTTTCAAACGGACATTGAAGCTGGACAGGTTGGGATCAACGTTCCGATTCCAGTTCCCTTGCCCTTCTTCTCGTTCACCGGCTCCAAGGCATCTTTTGCTGGGGATCTCAATTTTTATGGTAAGGCTGGGGTCAACTTCTTCACTCAGATCAAAACAGTGACACAACAATGGAAAGACTCAGCTGGAGGAACTACAGTCAACCTTGCAATGCCAACCTCTTTGAAGTCATAG 1563 44.02 MLQSSIRRVKKLNVLRPQIFALGNSRFSTFAEPSSKPNPPRVPNLIGGTFVDSQSSAFIDVINPATQEVVSQVPLTTNDEFNAAVSAAKQAFPAWRNTPVTTRQRIMFKLQELIRRDIDKLALNITTEQGKTLKDAHGDVFRGLEVVEHACGMASLQMGEYVSNVSHGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPVAVTCGNTFVLKPSEKDPGASIILAELAMEAGLPNGVLNVVHGTNDVVNAICDDEDIKAISFVGSNISNMGAKNHAIVLPDASIDATLNALVAAGFGAAGQRCMALSTVVFVGDSKFWEDKLVERAKTLKVNSGTEPDADLGPVISKQAKDRIHRLVQSGIDSGARLLLDGRNIVVPGYEQGNFIGPTILTDVTPDMECYKEEIFGPVLLCMQAGSLEEAISTVNRNRYGNGASIFTTSGIAARKFQTDIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGKAGVNFFTQIKTVTQQWKDSAGGTTVNLAMPTSLKS 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8949576 8959297 + Lsi03G006900.1 Lsi03g00690 658440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00690 520 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 25 268 IPR016162 GO:0016491
Lsi03g00690 520 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 11 517 IPR010061 GO:0004491
Lsi03g00690 520 Pfam Aldehyde dehydrogenase family 50 497 IPR015590 GO:0016491
Lsi03g00690 520 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL-LIKE 11 517 - -
Lsi03g00690 520 CDD ALDH_F6_MMSDH 42 501 IPR010061 GO:0004491
Lsi03g00690 520 SUPERFAMILY ALDH-like 37 502 IPR016161 GO:0016491
Lsi03g00690 520 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 295 306 IPR016160 GO:0016491
Lsi03g00690 520 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 269 496 IPR016162 GO:0016491
Lsi03g00690 520 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 271 463 IPR016163 GO:0016620
Lsi03g00690 520 TIGRFAM MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 44 501 IPR010061 GO:0004491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00821 Lsi-Chr1:6490990 Lsi03g00690 Lsi-Chr3:8949576 0 dispersed
Lsi03g00690 Lsi-Chr3:8949576 Lsi10g01510 Lsi-Chr10:19367032 5.35E-48 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00690 K00140 - csv:101204924 968.378