Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00696 AGCTATCATATTCGGAATTTGAAATCCAAGGCTTTGTATTGTGAATTATCTGTTTTTCATCGAGAATTTTTCTGCCGAGAAATGCCGGATTCCAATTTCCAAGACGCGATGTACGGTTCCGGAGTCATGAACAACGGTGGCCGGGATTTGGATAGCATTCAGAACCGAGTTGGCGACGAAGATGACGACATTAACGGCGGGGAAGAGTCCATAGACAATCCTCAGATGCGCTTCGAAGACTCTGGGGGAATGAGCGGCTCGGTCTCGGTAATGAACCGAGTCCAGGACGTTGTTCCTTCAACGTATGTTTCCGGCTCTGATTACAACCCTTTGACTGGAAACGGTGGTGCTGATCAACTTACACTGTCGTTCCGAGGGGAGGTTTACGCTTTTGACTCTGTATCGCCGGACAAGGTGCAAGCCGTGCTTTTGCTTTTAGGTGGATATGAAATTCCTTCTGGTATTCCTGCAGTTGGAAGTGTTCCCGTCAACCAACAGGGTACCGATGGCTTTCCTGTCAGGTCGGTTCAACCACAAAGAGTTGCTTCATTGAATAGGTTTAGAGAGAAGAGAAAAGAAAGGTGTTTTGAGAAGAAAATTCGCTACAGTGTGCGAAAAGAAGTTGCGCTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCCTCTAAAGCTATTGGAGATGAAGTGGGCTCATCTTCAGTTTTGTCTCAGACATTGGATTCTGGACAAGATGATGGCTTGTTGGAAACCTCATGTACACATTGTGGAACCAGTTCAAAATCTACTCCAATGATGCGTCGTGGGCCTACTGGCCCAAGGACTCTGTGCAATGCATGTGGGCTCAAGTGGGCCAATAAGAGCGACGGCGAAGCTGCTAATGAATCCGATGCTGCAATTAATGTGGGTATTCTCACTTCTAATGGTGATAAATAG 933 46.73 SYHIRNLKSKALYCELSVFHREFFCREMPDSNFQDAMYGSGVMNNGGRDLDSIQNRVGDEDDDINGGEESIDNPQMRFEDSGGMSGSVSVMNRVQDVVPSTYVSGSDYNPLTGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEIPSGIPAVGSVPVNQQGTDGFPVRSVQPQRVASLNRFREKRKERCFEKKIRYSVRKEVALRMQRKKGQFISSKAIGDEVGSSSVLSQTLDSGQDDGLLETSCTHCGTSSKSTPMMRRGPTGPRTLCNACGLKWANKSDGEAANESDAAINVGILTSNGDK 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9136922 9146267 - Lsi03G006960.1 Lsi03g00696 658446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00696 310 Pfam CCT motif 180 222 IPR010402 GO:0005515
Lsi03g00696 310 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 249 286 - -
Lsi03g00696 310 ProSiteProfiles CCT domain profile. 180 222 IPR010402 GO:0005515
Lsi03g00696 310 Pfam tify domain 117 147 IPR010399 -
Lsi03g00696 310 ProSitePatterns GATA-type zinc finger domain. 252 279 IPR000679 GO:0006355|GO:0043565
Lsi03g00696 310 MobiDBLite consensus disorder prediction 59 85 - -
Lsi03g00696 310 Pfam GATA zinc finger 252 286 IPR000679 GO:0006355|GO:0043565
Lsi03g00696 310 Gene3D - 248 293 IPR013088 GO:0006355|GO:0008270
Lsi03g00696 310 ProSiteProfiles Tify domain profile. 113 148 IPR010399 -
Lsi03g00696 310 PANTHER GATA TRANSCRIPTION FACTOR 28 28 286 IPR045280 GO:0006355
Lsi03g00696 310 SMART GATA_3 246 300 IPR000679 GO:0006355|GO:0043565
Lsi03g00696 310 PANTHER GATA TRANSCRIPTION FACTOR 18 28 286 - -
Lsi03g00696 310 SMART tify_2 113 148 IPR010399 -
Lsi03g00696 310 CDD ZnF_GATA 251 286 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02837 Lsi-Chr2:34546351 Lsi03g00696 Lsi-Chr3:9136922 4.85E-65 dispersed
Lsi03g00696 Lsi-Chr3:9136922 Lsi08g01017 Lsi-Chr8:18737338 1.47E-74 dispersed
Lsi03g00696 Lsi-Chr3:9136922 Lsi05g01573 Lsi-Chr5:23500178 1.11E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24981 PF06203 CCT 3.40E-15 CL0281 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00696 - - csv:101222542 503.442