Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00696 AGCTATCATATTCGGAATTTGAAATCCAAGGCTTTGTATTGTGAATTATCTGTTTTTCATCGAGAATTTTTCTGCCGAGAAATGCCGGATTCCAATTTCCAAGACGCGATGTACGGTTCCGGAGTCATGAACAACGGTGGCCGGGATTTGGATAGCATTCAGAACCGAGTTGGCGACGAAGATGACGACATTAACGGCGGGGAAGAGTCCATAGACAATCCTCAGATGCGCTTCGAAGACTCTGGGGGAATGAGCGGCTCGGTCTCGGTAATGAACCGAGTCCAGGACGTTGTTCCTTCAACGTATGTTTCCGGCTCTGATTACAACCCTTTGACTGGAAACGGTGGTGCTGATCAACTTACACTGTCGTTCCGAGGGGAGGTTTACGCTTTTGACTCTGTATCGCCGGACAAGGTGCAAGCCGTGCTTTTGCTTTTAGGTGGATATGAAATTCCTTCTGGTATTCCTGCAGTTGGAAGTGTTCCCGTCAACCAACAGGGTACCGATGGCTTTCCTGTCAGGTCGGTTCAACCACAAAGAGTTGCTTCATTGAATAGGTTTAGAGAGAAGAGAAAAGAAAGGTGTTTTGAGAAGAAAATTCGCTACAGTGTGCGAAAAGAAGTTGCGCTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCCTCTAAAGCTATTGGAGATGAAGTGGGCTCATCTTCAGTTTTGTCTCAGACATTGGATTCTGGACAAGATGATGGCTTGTTGGAAACCTCATGTACACATTGTGGAACCAGTTCAAAATCTACTCCAATGATGCGTCGTGGGCCTACTGGCCCAAGGACTCTGTGCAATGCATGTGGGCTCAAGTGGGCCAATAAGAGCGACGGCGAAGCTGCTAATGAATCCGATGCTGCAATTAATGTGGGTATTCTCACTTCTAATGGTGATAAATAG 933 46.73 SYHIRNLKSKALYCELSVFHREFFCREMPDSNFQDAMYGSGVMNNGGRDLDSIQNRVGDEDDDINGGEESIDNPQMRFEDSGGMSGSVSVMNRVQDVVPSTYVSGSDYNPLTGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEIPSGIPAVGSVPVNQQGTDGFPVRSVQPQRVASLNRFREKRKERCFEKKIRYSVRKEVALRMQRKKGQFISSKAIGDEVGSSSVLSQTLDSGQDDGLLETSCTHCGTSSKSTPMMRRGPTGPRTLCNACGLKWANKSDGEAANESDAAINVGILTSNGDK 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9136922 9146267 - Lsi03G006960.1 Lsi03g00696 658446

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00696 310 Pfam CCT motif 180 222 IPR010402 GO:0005515
Lsi03g00696 310 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 249 286 - -
Lsi03g00696 310 ProSiteProfiles CCT domain profile. 180 222 IPR010402 GO:0005515
Lsi03g00696 310 Pfam tify domain 117 147 IPR010399 -
Lsi03g00696 310 ProSitePatterns GATA-type zinc finger domain. 252 279 IPR000679 GO:0006355|GO:0043565
Lsi03g00696 310 MobiDBLite consensus disorder prediction 59 85 - -
Lsi03g00696 310 Pfam GATA zinc finger 252 286 IPR000679 GO:0006355|GO:0043565
Lsi03g00696 310 Gene3D - 248 293 IPR013088 GO:0006355|GO:0008270
Lsi03g00696 310 ProSiteProfiles Tify domain profile. 113 148 IPR010399 -
Lsi03g00696 310 PANTHER GATA TRANSCRIPTION FACTOR 28 28 286 IPR045280 GO:0006355
Lsi03g00696 310 SMART GATA_3 246 300 IPR000679 GO:0006355|GO:0043565
Lsi03g00696 310 PANTHER GATA TRANSCRIPTION FACTOR 18 28 286 - -
Lsi03g00696 310 SMART tify_2 113 148 IPR010399 -
Lsi03g00696 310 CDD ZnF_GATA 251 286 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00696 - - - csv:101222542 503.442
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02837 Lsi-Chr2:34546351 Lsi03g00696 Lsi-Chr3:9136922 4.85E-65 dispersed
Lsi03g00696 Lsi-Chr3:9136922 Lsi08g01017 Lsi-Chr8:18737338 1.47E-74 dispersed
Lsi03g00696 Lsi-Chr3:9136922 Lsi05g01573 Lsi-Chr5:23500178 1.11E-06 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi02g02837 . 1 230 Tify Gene Family AT3G21175 56.1 1.5e-58 223.0
Lsi08g01017 . 48 296 Tify Gene Family AT4G24470 52.7 6.1e-69 258.1
Lsi03g00696 . 116 286 Tify Gene Family AT4G24470 57.8 4.0e-44 175.6
Lsi02g02837 . 1 265 Tify Gene Family AT1G51600 59.7 3.3e-80 295.4
Lsi08g01017 . 41 250 Tify Gene Family AT1G51600 53.1 3.3e-48 189.1
Lsi03g00696 . 113 286 Tify Gene Family AT1G51600 59.9 1.3e-47 187.2
Lsi08g01015 . 52 199 Tify Gene Family AT1G51600 56.8 2.4e-38 156.4
Lsi08g01017 . 48 296 Tify Gene Family AT4G24470 52.7 6.1e-69 258.1
Lsi03g00696 . 116 286 Tify Gene Family AT4G24470 57.8 4.0e-44 175.6
Lsi02g02837 . 1 265 Tify Gene Family AT1G51600 59.7 3.3e-80 295.4
Lsi08g01017 . 41 250 Tify Gene Family AT1G51600 53.1 3.3e-48 189.1
Lsi03g00696 . 113 286 Tify Gene Family AT1G51600 59.9 1.3e-47 187.2
Lsi08g01015 . 52 199 Tify Gene Family AT1G51600 56.8 2.4e-38 156.4
Lsi02g02837 . 1 230 Tify Gene Family AT3G21175 56.1 1.5e-58 223.0
Lsi09g01294 . 1 174 Tify Gene Family AT4G14713 52.1 1.2e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005475 1 2 2 2 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 0 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24981 PF06203 CCT 3.40E-15 CL0281 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00696 Lsi_Chr03 FPKM 6.911038 7.328695 4.029842 5.328659 10.445104 10.440318 11.39446 6.446355 4.607387 6.658187