Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00702 ATGAACTGTAAGCAAACAAAATCCATGACTATTGATGATTATTACACTAAATTGATGAGCCTATTTGATGATTTAGATCGTCTTAAGCCGTTACATACTTGCAACTGTGGACTTTTTACATGTGATGTGTTTGAAAAGTTTGCAAATGATCGCAACGAAGAAAATTTTCATCAGTTTCTTATTGGACTTGATGATAATTTATATTCTATAGTGAGGACTAATCTTTTGTCTCAGAATCTTTTACCATCATTGGATGGTGCTTATCAGACTCTCATCCAAGAAGAGCATTCTCGTGATATGGCTCAAAATAAGGTTGTTCCACAAGAGAATCATGTTTTTTCTTTGCAAGTGGCTCGTCCAAAAGGAAGATCAGATAAGTCCAACAAACCTGACAAGTCTCACCTATCATGCACTTATTGCAAACAGACTGGTCATGATGTGTCCACTTGTTTTAAAATTCATGGCTACCCAGATTGGTGGGAACAACGACCAACAGGTGGCAAGGGAACGATAGGTCGGGCTCATGGTTCTAGTGCTCGTGTTAATGTTGCAGTTGCAGGTAGTGTTGTTGCATATAGTAATAACACACAGGTGTCTGAGAATAGTGCTTCAGTTTCTGCATTGGCTGCTCTCAAGCCCGAACAAGTTCAAATCTTGTTGAATATGCTAAACAAGAGTCATCCAGTCAGCTTGCCCAATGGAAATAAAATAGTTGCCACAATGGAGGGGCGAGTTGTTCTTCCAGAGAGTAATTTTGAGGAATTAGCGCTCCCTAACAATGTTGATCCAATTGATAAGGTTGTGGAATCGACTACTGTTGTTGATAATATAAAGGATGTTGAGGATGAGATGTCTGACAGTGCTTCGGGTGAAACTTCTATGGTTGTCATTCCACCAGCAACGCAACTCAATGAACATAGGTCAGTGAGTGAAGTGGTTGCTTTAGGCAGAGGTTTACGAGAAAAACATCCATCAGTTCTTCTTCGTGATTTTGTCCTTGAACCTACACAGAAAGAGAGTCCATCCCTAAGTTCACCGACGTCCTCTAGCTCTTCAGTTGAGGATGATTTGTTGGTCATGCTTAATATGGTTGTTATTGCAATTGTTAAGTCATGTATCCAAGTTGACCCACCCTCATGTTCCTTTTATGACAGTGAATGTCGGTCCAAACGTGAAATGCCATCTCTGTATCCTCATGCCAAAGGCATATTATATGCACTTAAAGACAAGGGAATTGGCCTTGCCATTGCTTCTAGATCACCAACATCTGATATTGCCAAGACATTTATTGATAAATTGGGAATCGGGTCAATGTTCGTAGCTCAGGAGATATTTTCCAGTTGGACACACAAAACAGATCATTTCCAGAGAATTCATTCGAGGACTGGTGTACCATTCAAGTCTATGCTATTCTTTGATGACGAGGATCGGAACATCGAAACTGTTTCTAAAATGGGAGTAACTAGTATTCTGGTTGGCAATGGAGTTAATCTTGGGGCACTGAGGGAGGGACTCACAAATTTCTCCCAGAATGTGAATAAAATTGAGAAGAACAAGAAGAAATGGGCAAAGTACACCCAGAACTCAACTTCATCAGAGAAGACTGAGTAA 1611 40.16 MNCKQTKSMTIDDYYTKLMSLFDDLDRLKPLHTCNCGLFTCDVFEKFANDRNEENFHQFLIGLDDNLYSIVRTNLLSQNLLPSLDGAYQTLIQEEHSRDMAQNKVVPQENHVFSLQVARPKGRSDKSNKPDKSHLSCTYCKQTGHDVSTCFKIHGYPDWWEQRPTGGKGTIGRAHGSSARVNVAVAGSVVAYSNNTQVSENSASVSALAALKPEQVQILLNMLNKSHPVSLPNGNKIVATMEGRVVLPESNFEELALPNNVDPIDKVVESTTVVDNIKDVEDEMSDSASGETSMVVIPPATQLNEHRSVSEVVALGRGLREKHPSVLLRDFVLEPTQKESPSLSSPTSSSSSVEDDLLVMLNMVVIAIVKSCIQVDPPSCSFYDSECRSKREMPSLYPHAKGILYALKDKGIGLAIASRSPTSDIAKTFIDKLGIGSMFVAQEIFSSWTHKTDHFQRIHSRTGVPFKSMLFFDDEDRNIETVSKMGVTSILVGNGVNLGALREGLTNFSQNVNKIEKNKKKWAKYTQNSTSSEKTE 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9220274 9230068 - Lsi03G007020.1 Lsi03g00702 658452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00702 536 PANTHER MAGNESIUM-DEPENDENT PHOSPHATASE 1 MDP1 361 525 IPR010036 GO:0016791
Lsi03g00702 536 Pfam Acid Phosphatase 395 510 IPR010036 GO:0016791
Lsi03g00702 536 Gene3D - 369 514 IPR023214 -
Lsi03g00702 536 PANTHER MAGNESIUM-DEPENDENT PHOSPHATASE 1-LIKE 361 525 - -
Lsi03g00702 536 SUPERFAMILY HAD-like 391 509 IPR036412 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00702 K17619 MDP1; magnesium-dependent phosphatase 1 [EC:3.1.3.48 3.1.3.-] - csv:101202744 279.256
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g960 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi03g00702 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00702 Lsi_Chr03 FPKM 8.485035 8.629339 0.35232 0.356 8.22507 6.188458 8.820217 0.0 0.0 0.0