Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00705 TCGCCCGCTTCAAAACCCCGACTCTCTTCTATTTCACCATTCTCTTCTCTCAAATCCTTCTTCCATCTCTCTCTCTCTCTCTCTTCTTCTCAATTTTCCTCTTTCAACCATTTTCTTTCTGCTCCCATGGATGAAGAATACGACGTCATCGTTCTTGGTACCGGCCTTAAGGAATGCATTCTCAGCGGCCTTCTCTCTGTTGACGGCCTCAAAGTACTTCATATGGATAGAAATGATTATTATGGAGGAGCATCAACCTCTCTTAATCTCATACAGCTTTGGAAGCGTTTCAGGGGGAATGATAAGCCTCCAGAACAGTTGGGCTTGAGCAAAGAGTACAATGTTGATATGATACCCAAGGTAGACGTTACTAAATACCTACACTTCAAGGCTGTTGATGGTAGTTTTGTGTACAACAAGGGAAAGATTTACAAAGTTCCAGCTACTGATGTTGAAGCTCTGAAGTCACCACTGATGGGACTTTTTGAGAAACGTCGTGCTCGAAAGTTCTTCATTTATGTCCAAGATTATGAAGAGAGTGATCCAAAATCTCACGAAGGTTTAGATTTAAGCAAAGTTACAGCTAGAGAACTCATCACGAAGTATGGGCTAGAAGATGATACAATTGACTTTATTGGGCATGCTTTGGCACTACATTTTGACGATAGTTATTTGGATGGGCCAGCATCGGATTTCGTGAAGAAAATGAAGAAACCGTCTTTTATGCTTTTTACTCTTTACTTTCGTCCATGCATATGTTCTATATTTAGAAAGCAAAATCGAAAATCTTGCACTGCATTATATCAGACTGGTAAGCTTTACGCAGAATCTTTGGCACGCTTCCAAGGAGGGTCTCCCTATATCTATCCACTCTACGGACTTGGAGAGTTGCCTCAGGCATTTGCCCGTTTAAGTGCCGTTTATGGTGGAACTTACATGCTCAACAAACCAGAATGCAAGGTCGAGTTTGATAGCGATGGAAAAGCTTATGGTGTGACTTCCGAAGGAGAAACTGCTAAATGCAAAAAGGTTGTTTGTGATCCATCGTATCTGCCAGACAAGGTAACTCTCGACATCGAAAAAAGAATTGCGTACATTATATCTGCCGATCCTACTCTATTGATTCAACAGGTTAAGAAGGTTGGAAAAGTAGCTCGTGCAGTTTGTATAATGAGTCATCCAATCCCAGACACCAATGATTCTCATTCAGCTCAGGTTATTCTGCCGCAAAAGCAACTTGGCCGTAAATCAGACATGTACCTCTTCTGTTGCTCATACGCACACAACGTTGCTCCAAAAGGAAAATTCATTGCTTTCGTTTCCACGGAAGCAGAGACCGATAATCCTGAAGTAGAATTGAAGCCTGGGATTGACCTCCTTGGACCTGTTGATGAGATATTCTATGAAACTTATGACAGATATATTCCCACAAATAACCATGAAATAGACCATTGCTTCATATCTACGAGTTACGATGGAAGCACCCATTTTGAGTCTACAGTAACAGATGTGCTTGACATGTACAGCAAGATCACTGGAAAGGCTGTTGATCTTTCTGTGGATCTCAGTGCTGCAAGTGCTGCTGCTGAAGAATGA 1596 41.73 SPASKPRLSSISPFSSLKSFFHLSLSLSSSQFSSFNHFLSAPMDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGASTSLNLIQLWKRFRGNDKPPEQLGLSKEYNVDMIPKVDVTKYLHFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQDYEESDPKSHEGLDLSKVTARELITKYGLEDDTIDFIGHALALHFDDSYLDGPASDFVKKMKKPSFMLFTLYFRPCICSIFRKQNRKSCTALYQTGKLYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDSDGKAYGVTSEGETAKCKKVVCDPSYLPDKVTLDIEKRIAYIISADPTLLIQQVKKVGKVARAVCIMSHPIPDTNDSHSAQVILPQKQLGRKSDMYLFCCSYAHNVAPKGKFIAFVSTEAETDNPEVELKPGIDLLGPVDEIFYETYDRYIPTNNHEIDHCFISTSYDGSTHFESTVTDVLDMYSKITGKAVDLSVDLSAASAAAEE 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9282049 9287047 - Lsi03G007050.1 Lsi03g00705 658455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00705 531 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 1 146 286 - -
Lsi03g00705 531 PRINTS Rab GDI protein signature 467 486 IPR000806 GO:0005093|GO:0015031
Lsi03g00705 531 PRINTS Rab GDI protein signature 488 508 IPR000806 GO:0005093|GO:0015031
Lsi03g00705 531 PRINTS Rab GDI protein signature 58 70 IPR000806 GO:0005093|GO:0015031
Lsi03g00705 531 PRINTS Rab GDI protein signature 409 425 IPR000806 GO:0005093|GO:0015031
Lsi03g00705 531 PRINTS Rab GDI protein signature 434 452 IPR000806 GO:0005093|GO:0015031
Lsi03g00705 531 PANTHER GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 368 528 - -
Lsi03g00705 531 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 2 365 468 - -
Lsi03g00705 531 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 2 99 145 - -
Lsi03g00705 531 PANTHER GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 272 356 - -
Lsi03g00705 531 PANTHER GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 43 237 - -
Lsi03g00705 531 Gene3D - 44 358 IPR036188 -
Lsi03g00705 531 PRINTS Rab GDI/REP protein family signature 111 128 IPR018203 GO:0005092|GO:0007264
Lsi03g00705 531 PRINTS Rab GDI/REP protein family signature 275 292 IPR018203 GO:0005092|GO:0007264
Lsi03g00705 531 PRINTS Rab GDI/REP protein family signature 66 83 IPR018203 GO:0005092|GO:0007264
Lsi03g00705 531 PRINTS Rab GDI/REP protein family signature 293 314 IPR018203 GO:0005092|GO:0007264
Lsi03g00705 531 PRINTS Rab GDI/REP protein family signature 48 66 IPR018203 GO:0005092|GO:0007264
Lsi03g00705 531 Pfam GDP dissociation inhibitor 366 519 IPR018203 GO:0005092|GO:0007264
Lsi03g00705 531 Pfam GDP dissociation inhibitor 43 237 IPR018203 GO:0005092|GO:0007264
Lsi03g00705 531 Pfam GDP dissociation inhibitor 268 356 IPR018203 GO:0005092|GO:0007264
Lsi03g00705 531 SUPERFAMILY FAD/NAD(P)-binding domain 43 351 IPR036188 -
Lsi03g00705 531 PANTHER RAB GDP-DISSOCIATION INHIBITOR 368 528 IPR018203 GO:0005092|GO:0007264
Lsi03g00705 531 PANTHER RAB GDP-DISSOCIATION INHIBITOR 43 237 IPR018203 GO:0005092|GO:0007264
Lsi03g00705 531 SUPERFAMILY FAD-linked reductases, C-terminal domain 378 474 - -
Lsi03g00705 531 SUPERFAMILY FAD/NAD(P)-binding domain 476 519 IPR036188 -
Lsi03g00705 531 PANTHER RAB GDP-DISSOCIATION INHIBITOR 272 356 IPR018203 GO:0005092|GO:0007264
Lsi03g00705 531 Gene3D - 469 526 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00705 K17255 GDI1_2; Rab GDP dissociation inhibitor - vcn:VOLCADRAFT_83359 518.464
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00705 Lsi-Chr3:9282049 Lsi09g01075 Lsi-Chr9:16760327 1.45E-112 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g966 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi03g00705 . . Cme01g00204 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00218 .
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00705 Lsi_Chr03 FPKM 2.333333 0.0 4.909755 2.957838 3.505918 2.427643 2.004331 5.040627 5.239329 4.757859