Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00721 ATGCCGTCAAAGGGAAAGAAGAACTCAAAAACACTCTCTAGATTGTCAAACTCAAACCACTCTCAGTCTCCAGTGCCACGATTGACCATACCTCCTGCCTCCGAAGTTTGTGAAGATGAGTTTCTTTCCTCTATTGAAGAAGCTTCAAGTAAATATCCTTCTTTGATTGGTAAATCTGCTTTTGTTGGGAGAGTTACTAATGCTCCAGTTCAATCTACTGGCTGTAAAGTTTGGCTTTCTGAATCTTCTATGGTTGCTTCTAGCTTCACTCAAGGGGCTATTGTCTCGGTAGCACTTAGTTCCGAGGGAGGTAACAATTTCAAAGGCTTTCCTCTGTCCTCGTTAGCAGATGAATGTGGTAGGCAGTTTGGGGTTGATTCTGGAGATTCAATAATCCATGAAGCGGGAAATTATTTTGCTCTTGCGAGAATTTTCTCTTCTAGTAAGGAGTTAAATGATGGAGTGCAATTATCAACAAACCTCTCGTTTACCTTGGGTTGCCCTACAATTGGCCGTGTTGTGTTTATCTCCCCTTTAAAAACCCACCCATGCAATGATCCATTAAATGATAATGGTAAATTGAAGAGCACAGAAGTTGAATCTCTGAGAATATACAATTGTAAGGAACTGTTGCTGGATCTAGCTTCTTCAACCAATATATCAACAAAAGACAACTTATTCTCTTCCTCAACTATTTATTCAAGAAAGGCTCGTGGTTGTAGTGAAAATGGTAATTTAACATCCCCAAGCACCATGCTGTCTGCTTCTCCTAAATGTGATGACGTGGCATCAAATTTACTGAGTCCATGTGCTCATTCACTTATTAAGGAGGCCTTAGGAGATGATACCGTCAGAAAAACTCTACAGACGATTGCTTCCAATGAGTTGTATAAACGTTGTTTGCTGCGTGGTAATCTTGTAACTATCCCAGTGCTTTCAGATCTTTGTACATTTCATGTAAGGGGTGGTAAAGGACTGTCGGGATACGATGACTCTTATGATTCTATGCACAGTGGAAGCGACAATCATTTTCAACATTTTTCATCTAATGAATATGTGGATTGTGCTTTCAATATAGACCAGCTAACAAAAGTAGTTATAAATGTTCAATCAACCATGGGCTCAGAGACAGTGCAAGAAAGAGTTCCATCAAATGTGGAACCTCAAAATCTAAATATTAGAGCGAAAGTAAAGCCTCAAGTTTGGAAATTGGGTGGTCTTTCAAAAGAATACTCAGTTTTGAAGGATATTATAATTGCTTCATCATTAAATAGCACCGTGTCAAGCCTTGGCTTACGAACCACAAAGGGAGTACTTATTCATGGTCCTCCTGGCACTGGAAAAACTTCCTTGGCTCAATTATCTGCTCATGACGCTGGTGTCAACTTATTCTATTTGAATGGACCTGAAATTATAAGTCAATATCATGGGGAAAGTGAGCAGGCCTTGCATGACGTTTTTGAGGTGGCAAGCCAAGCTGCGCCTGCTGTGATATTAATTGATGAGTTGGATGCTATTGCGCCTGCAAGAAAAGATGGAGGTGAAGAGCTGTCTCAAAGAATTGTTGCTACATTGCTTAATCTAATGGATGGGATCAACCGAAGTGGTGGGCCACTTGTAATTGCTTCAACCAACAGACCCGATAGCATTGAGCCCGCACTAAGGCGGCCTGGGAGACTTGACCGGGAAATTGAAATAGGTGTGCCATCTCCCAACCAACGGTTGGATATCCTACATACAATACTAAGTGAAATGGAGCACTCTCTTTCAGTCGTGCAAGTTCAACATCTAGCTATGGTCACACATGGTTTTGTGGGTGCCGATTTGGCTGCCCTTTGCAATGAGGCTGCCTTAGTTTGTATAAGGCGTTATCACGAGTTTAAAGTTTCTTCTGATTGCCGTAGTTCTGGTAGATCTGTCATAGCAGAGGAACAACACAAGTTTACTGAGGTGGATCACAAAGTCAACGTCGATCATATGATTTTGGAACCTGTTTTCTCACAGGATGCAAGAAGTATATCAGGCGTTTGCCCAAACCTTGCGTCTTCATCAATCTCTGAACATACTTTTACATCTGACCCTCTAACAAGTGTGTCCTCGAATGAAATGGTTGCTGATAGTGAGAATATTTTTAACTCTTCTGAAATCAAGTGTAGATTGAAGGTTATTTTTGAAGACTTTGAGATGGCTAGAATGAAAGTGAGACCTAGTGCCATGCGAGAGGTCATACTTGAGGTTCCAAAGGTAAAATGGGAAGATATTGGTGGACAAATGGAGGTTAAGGCTCAATTAATGGAAGCAGTGGAATGGCCTCAAAAACATCAGGATGCATTCAAGCGAATAGGGACTCGACCTCCAACAGGAGTGTTGATGTTTGGTCCTCCTGGATGTAGCAAAACCCTCATGGCACGTGCTGTAGCTTCTGAAGCAGGACTAAATTTCCTTGCAGTGAAGGGCCCAGAACTTTTCAGTAAATGGGTTGGTGAATCTGAGAAGGCAGTTAGATCTCTGTTTGCTAAGGCAAGAGCTAACGCCCCATCAATCGTATTTTTTGATGAAATTGATGGTCTTGCTGTCATTCGAGGGAAGGAAAGTGATGGGGTTTCTGTTTCTGATAGAGTTATGAGTCAACTTCTTGTTGAAATGGATGGTTTACATCAGAGAGTTGGTGTCACTGTCATTGCAGCTACCAATCGGCCAGATAAGATTGATCCAGCCCTTCTAAGGCCAGGACGTTTTGATCGGTTGCTTTATGTTGGGCCCCCAAATGAATCTGAACGAGAAGAGATATTTCGTATCCATTTGTGCAAAGTTCCTTGCAGCCCAGATGTCAGTACGAGGAAGTTGGCTTCTCTTACTCAAGGGTGTACAGGGGCTGACATATCATTAATTTGCAGAGAATCAGCTTTATTTGCCCTTGAGGAGAACCTTGAGGCTTCAAGAATAAATATGCAACATTTAGAAACTGCAGCTAGACACGTGAAGCCATCTGAAACTGAACCTTACCGAGAATTATCATCTAGGTTTCAAAGGCTTGTTTGTTCTAGCTCACAAGAAGCTAATGTTGTGTGTCAGCAGTCACGATCTAACTGGTTTTCTTTTTGGTGA 3108 41.73 MPSKGKKNSKTLSRLSNSNHSQSPVPRLTIPPASEVCEDEFLSSIEEASSKYPSLIGKSAFVGRVTNAPVQSTGCKVWLSESSMVASSFTQGAIVSVALSSEGGNNFKGFPLSSLADECGRQFGVDSGDSIIHEAGNYFALARIFSSSKELNDGVQLSTNLSFTLGCPTIGRVVFISPLKTHPCNDPLNDNGKLKSTEVESLRIYNCKELLLDLASSTNISTKDNLFSSSTIYSRKARGCSENGNLTSPSTMLSASPKCDDVASNLLSPCAHSLIKEALGDDTVRKTLQTIASNELYKRCLLRGNLVTIPVLSDLCTFHVRGGKGLSGYDDSYDSMHSGSDNHFQHFSSNEYVDCAFNIDQLTKVVINVQSTMGSETVQERVPSNVEPQNLNIRAKVKPQVWKLGGLSKEYSVLKDIIIASSLNSTVSSLGLRTTKGVLIHGPPGTGKTSLAQLSAHDAGVNLFYLNGPEIISQYHGESEQALHDVFEVASQAAPAVILIDELDAIAPARKDGGEELSQRIVATLLNLMDGINRSGGPLVIASTNRPDSIEPALRRPGRLDREIEIGVPSPNQRLDILHTILSEMEHSLSVVQVQHLAMVTHGFVGADLAALCNEAALVCIRRYHEFKVSSDCRSSGRSVIAEEQHKFTEVDHKVNVDHMILEPVFSQDARSISGVCPNLASSSISEHTFTSDPLTSVSSNEMVADSENIFNSSEIKCRLKVIFEDFEMARMKVRPSAMREVILEVPKVKWEDIGGQMEVKAQLMEAVEWPQKHQDAFKRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIVFFDEIDGLAVIRGKESDGVSVSDRVMSQLLVEMDGLHQRVGVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNESEREEIFRIHLCKVPCSPDVSTRKLASLTQGCTGADISLICRESALFALEENLEASRINMQHLETAARHVKPSETEPYRELSSRFQRLVCSSSQEANVVCQQSRSNWFSFW 1035
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9631386 9643393 - Lsi03G007210.1 Lsi03g00721 658471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00721 1035 Coils Coil 970 990 - -
Lsi03g00721 1035 ProSiteProfiles Plant heme peroxidase family profile. 438 761 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00721 1035 MobiDBLite consensus disorder prediction 1 30 - -
Lsi03g00721 1035 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 747 996 IPR027417 -
Lsi03g00721 1035 SMART AAA_5 434 570 IPR003593 -
Lsi03g00721 1035 SMART AAA_5 785 923 IPR003593 -
Lsi03g00721 1035 MobiDBLite consensus disorder prediction 1 28 - -
Lsi03g00721 1035 Pfam ATPase family associated with various cellular activities (AAA) 438 567 IPR003959 GO:0005524|GO:0016887
Lsi03g00721 1035 Pfam ATPase family associated with various cellular activities (AAA) 789 920 IPR003959 GO:0005524|GO:0016887
Lsi03g00721 1035 Gene3D - 385 567 IPR027417 -
Lsi03g00721 1035 PANTHER - 41 1019 - -
Lsi03g00721 1035 CDD AAA 432 567 - -
Lsi03g00721 1035 ProSitePatterns AAA-protein family signature. 891 909 IPR003960 GO:0005524|GO:0016887
Lsi03g00721 1035 CDD AAA 755 921 - -
Lsi03g00721 1035 Gene3D - 922 992 - -
Lsi03g00721 1035 Gene3D - 746 993 IPR027417 -
Lsi03g00721 1035 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 404 623 IPR027417 -
Lsi03g00721 1035 Pfam AAA+ lid domain 592 626 IPR041569 -
Lsi03g00721 1035 Pfam AAA+ lid domain 943 988 IPR041569 -
Lsi03g00721 1035 PANTHER AAA-FAMILY ATPASE 41 1019 - -
Lsi03g00721 1035 Gene3D - 568 699 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00721 Lsi-Chr3:9631386 Lsi03g02015 Lsi-Chr3:31545609 2.30E-37 dispersed
Lsi03g00721 Lsi-Chr3:9631386 Lsi01g01312 Lsi-Chr1:11387008 8.85E-36 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00721 - - csv:101220574 1830.84