Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00730 ATGGATTTCCTCTCGACCAGAAAACTCCTCTCCGACGACGAAGACCTCGACAAATTCTGCAAACACTGCGCCGATTACCTTTCCGATTCTTGCTCTTCCGATTGCATCGAAAAATGCCCAAGTCTCTGCTCTATCTCAGTTCCAATCCCACCGCCTCCCTCAAAATCGCCTCACAAACTCTCCAATTTGGTTACCTCCACCATCGCTCTTCTCTCCTTCACTTTTCTCCTCGTCCTCTGCTACGCCATCTACGCCCGTTTCTACTCCGGCCGCCGCAGACGGATTCGCCGCCCCGATGCTCCACCGCCCGCGACTCATCACCAGCATGACTTTCTCGATGAAGAACAGGGCCCTGTTTTGGATCACCCCATTTGGTACATACGCACCATCGGCCTCCCGCCGGCCGTCATCGAGGCTATCGCCGTCTGTAAGTTTAAATCCGGCGAGGGTTTGATTGATGGAACAGAGTGCTCTGTTTGTTTGAGCGAATTTGAAGAGGATGAAACCTTGAGGCTTTTGCCAAAGTGTAGCCACGCTTTTCATCTCCCCTGTATTGACACTTGGCTTCGATCTCACACCAATTGCCCCATGTGTCGCGCTCCTGTTGTAGCTCAGGCTACCGCCGCTGCTTCTCCTCCACCGCCACCGCCTCCGGTTGAAACCCAGATGGGGGATTTGCAAAGGGAAGAGGGAAATGGATCCAATTTGGGGGAAAGTTCAGCTAGAAATGAAGAACAAGAGCAAGAACAAGAAATCCATTTTCCTGAGGATGATTTAGAAGCAAGAAGTGGTGATATTCAGCCAGTGAGAAGATCTGTATCACTAGATTCTTTATCAGCTCTTAGAATCAGCTCAGTTTTTGCTGGTGTTAATGAAAAAACGGACTCTGAAGCTGAATCAATGCAGAGAAATGGGAATGGTTTGAGAAAATCATCGCAAGGGAGAGGCAATTCTTCTTCTGCCATGAACAGGTCAGTTTCTTGCAGTGGGAAGTTCCTAATGAGAAGCTCCACTCAGAGAAGTAATGGAACTAATCACAGTTGA 1044 49.23 MDFLSTRKLLSDDEDLDKFCKHCADYLSDSCSSDCIEKCPSLCSISVPIPPPPSKSPHKLSNLVTSTIALLSFTFLLVLCYAIYARFYSGRRRRIRRPDAPPPATHHQHDFLDEEQGPVLDHPIWYIRTIGLPPAVIEAIAVCKFKSGEGLIDGTECSVCLSEFEEDETLRLLPKCSHAFHLPCIDTWLRSHTNCPMCRAPVVAQATAAASPPPPPPPVETQMGDLQREEGNGSNLGESSARNEEQEQEQEIHFPEDDLEARSGDIQPVRRSVSLDSLSALRISSVFAGVNEKTDSEAESMQRNGNGLRKSSQGRGNSSSAMNRSVSCSGKFLMRSSTQRSNGTNHS 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9827304 9828347 - Lsi03G007300.1 Lsi03g00730 658480

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00730 347 PANTHER RING-H2 FINGER PROTEIN ATL54 20 336 - -
Lsi03g00730 347 MobiDBLite consensus disorder prediction 292 347 - -
Lsi03g00730 347 CDD RING-H2_PA-TM-RING 156 199 - -
Lsi03g00730 347 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 20 336 IPR044675 -
Lsi03g00730 347 SMART ring_2 157 198 IPR001841 -
Lsi03g00730 347 MobiDBLite consensus disorder prediction 300 347 - -
Lsi03g00730 347 ProSiteProfiles Zinc finger RING-type profile. 157 199 IPR001841 -
Lsi03g00730 347 MobiDBLite consensus disorder prediction 227 241 - -
Lsi03g00730 347 MobiDBLite consensus disorder prediction 207 265 - -
Lsi03g00730 347 SMART FANCL_C_2 153 206 - -
Lsi03g00730 347 MobiDBLite consensus disorder prediction 242 265 - -
Lsi03g00730 347 Pfam Ring finger domain 156 199 IPR001841 -
Lsi03g00730 347 SUPERFAMILY RING/U-box 151 205 - -
Lsi03g00730 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 208 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00730 - - - cmo:103495376 507.294
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00793 Lsi-Chr1:6243740 Lsi03g00730 Lsi-Chr3:9827304 1.52E-41 dispersed
Lsi03g00730 Lsi-Chr3:9827304 Lsi09g01100 Lsi-Chr9:17598438 1.11E-37 dispersed
Lsi07g01081 Lsi-Chr7:16183611 Lsi03g00730 Lsi-Chr3:9827304 5.51E-15 dispersed
Lsi09g01933 Lsi-Chr9:28135972 Lsi03g00730 Lsi-Chr3:9827304 2.89E-21 transposed
Lsi03g00730 Lsi-Chr3:9827304 Lsi08g00989 Lsi-Chr8:18348886 8.59E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g981 . . . . . . . . . Cmo11g01477 . . . . Sed10g1872 Cpe04g00372 Cpe15g00366 Bhi05g00901 Tan02g1189 Cmetu01g2487 Lac12g0060 Hepe02g0730 . . . . . . . . . . . . . Lsi03g00730 . . . . . Bda15g00493 . . . . . . . . Cma11g01659 Cma19g00468 Car11g01180 Car19g00344 . . . . . . . . . Cla09g01565 Cam09g1596 Cec09g1718 Cco09g1775 . . Cre09g1612 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011597 1 2 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00730 Lsi_Chr03 FPKM 67.740593 71.811897 20.938234 21.303659 6.777102 4.923641 6.874109 12.482179 12.933288 13.621804