Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00736 ATGAAGTTATTGGTTCCTTACTGTTTCCTTCTCAATGGGGATGGGGGTTTGATTATTGGGGCAGATGATGTTATTGTTACAGGAGTATTGAGTGCAAAGTGGTCCCCAGACCTCAAAGATGTTCGGTGTGACCTTGATCCAATGCTAATTGCGAATCATGTGAGAAGAACCAATGAACTAAAGGCCGAGGTTGACATCCCTGATGATATAATTATGAAATTTAGGCAGTTCTGGTCAGATTTCAAAGACACTCCTTTAAAAGGAAGAAATGCTATTCTGAGAGGTATATGCCCTCAAGTGTTTGGACTTTTTACTGTAAAGCTTGCAGTGGCTTTAACACTCATTGGAGGTGTACAACATGTGGATATTTCTGGTACTAAAGTTCGAGGAGAATCCCATCTACTGTTGGTTGGCGATCCTGGTACTGGAAAGTCACAGTTCTTGAAATTTGCTGCCAAATTGAGCAACCGAGCTGTTATTACCACTGGATTAGGAAGCACTAGTGCAGGATTGACTGTCGCTGCTGTTAAGGATGGAGGGGAATGGATGCTGGAAGCTGGGGCACTTGTACTGGCTGATGGAGGACTTTGTTGCATAGATGAAGTGGACAGATTTGATATCGTTCTTGTGCTTTTGGATACAAAAAACCCTGAATGGGATGCAGTTGTTTCATCTCATATTCTCTCCGAGTGCAAACAAGAAAAAGGAAAACGTGACAATGATCTTTCAAGTAACTGGCCTCTTACTATGCTTCGACGGGGAACTAATCTCATACCAATTCTATTTCTTGTAACAAGTACTACTAGCCAGATATACATCCAATTTGTAAAAGGATACTTCAGACCGGTCCTGACTATGGAAGCTGAGCAAATTATTTCAAACTATTATCAGCTTCAAAGAAGATCAGCCATGGATAATGCAGCCAGGACAACAGTACGCATGCTTGAAAGCTTGATACGCTTAGCACAAGCACATGCACGCCTCATGTTTAGAAATGAGGTTACCCGTCTCGATGCCATTACGGCTATTTTGTGCGTTGAATCATCCATGACAACCTCAGCTTTAGTGGATAGTGTTGGGAATGCCTTGCACTCTAATTTTACCGAGAACCCAGACGAGGAATCTGCCGTCGAGCCCATCGTCGCCGCGCCTCGCCCAGCTGCCGTCGAGCCCATCGTCGCCGCGCCTCGCCCAGCTGCCGTCGAGCCCATCGTCGCCGCGCCTCGCCCAGCTGCCGTCGAGCCCATCGTCGCCGCGCCTCGCCCAGCTGCCGTCGAGCCCATCGTCGCCGCGCCTCGCCCAGCTGCCGTCGAGCCCATCGTCGCCGCGCCTCGCCCAGCTGCCGTCGAGCCCATCGTCGCCGCGCCTCGCCCAGCTGCCGTCGAGCCCATCGTCGCCGCGCCTCGCCCAGCTGCCGTCGAGCCCATCGTCGCCGCGCCTCGCCCAGCTGCCGTCGAGCCCATCGTCGCCGCGCCTCGCCCAGCTGCCGTCGAGCCCATCGTCGCCGCGCCTCGCCCAGCTGCCGTCGAGCCCATCGTCGCCGCGCCTCGCCCAGCTGCCGTCGAGCCCATCGTCGCCGCGCCTCGCCCAGCTGCCGTCGAGCCCATCCCCGAGACATCAATTATCATCCAACGGCTAGTAAACCAAAGCCGTCGGATCACTCGACCGTTACAACTCCCAACGCTTAAAATTCTCAAAATCACCACCGTCCGATTCTCCACCACATCGAGATCTCCGCCAAATCCAACGGCATAA 1755 52.54 MKLLVPYCFLLNGDGGLIIGADDVIVTGVLSAKWSPDLKDVRCDLDPMLIANHVRRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRAVITTGLGSTSAGLTVAAVKDGGEWMLEAGALVLADGGLCCIDEVDRFDIVLVLLDTKNPEWDAVVSSHILSECKQEKGKRDNDLSSNWPLTMLRRGTNLIPILFLVTSTTSQIYIQFVKGYFRPVLTMEAEQIISNYYQLQRRSAMDNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCVESSMTTSALVDSVGNALHSNFTENPDEESAVEPIVAAPRPAAVEPIVAAPRPAAVEPIVAAPRPAAVEPIVAAPRPAAVEPIVAAPRPAAVEPIVAAPRPAAVEPIVAAPRPAAVEPIVAAPRPAAVEPIVAAPRPAAVEPIVAAPRPAAVEPIVAAPRPAAVEPIVAAPRPAAVEPIVAAPRPAAVEPIPETSIIIQRLVNQSRRITRPLQLPTLKILKITTVRFSTTSRSPPNPTA 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9886902 9923138 - Lsi03G007360.1 Lsi03g00736 658486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00736 584 Pfam MCM P-loop domain 90 204 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi03g00736 584 Gene3D - 73 203 IPR027417 -
Lsi03g00736 584 Gene3D - 204 355 IPR027417 -
Lsi03g00736 584 PANTHER DNA HELICASE MCM9 203 376 - -
Lsi03g00736 584 PANTHER DNA HELICASE MCM9 22 203 - -
Lsi03g00736 584 PRINTS Mini-chromosome maintenance (MCM) protein family signature 187 201 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi03g00736 584 PRINTS Mini-chromosome maintenance (MCM) protein family signature 129 144 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi03g00736 584 ProSiteProfiles MCM family domain profile. 88 206 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi03g00736 584 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 203 376 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lsi03g00736 584 SMART mcm 1 351 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lsi03g00736 584 Pfam MCM AAA-lid domain 271 349 IPR041562 -
Lsi03g00736 584 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 354 IPR027417 -
Lsi03g00736 584 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 22 203 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lsi03g00736 584 SMART AAA_5 130 239 IPR003593 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00736 K10738 MCM9; DNA helicase MCM9 [EC:5.6.2.4] - gmx:100776255 470.314
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00736 Lsi-Chr3:9886902 Lsi03g01268 Lsi-Chr3:23425369 6.46E-28 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g00008 . 108 393 Core DNA Replication Machinery Family AT4G14700 52.6 2.6e-76 283.9
Lsi08g00009 . 1 140 Core DNA Replication Machinery Family AT4G14700 68.1 5.7e-55 213.0
Lsi08g00008 . 108 393 Core DNA Replication Machinery Family AT4G12620 55.3 1.1e-82 305.1
Lsi08g00009 . 1 140 Core DNA Replication Machinery Family AT4G12620 69.5 6.8e-56 216.1
Lsi08g01455 . 2 372 Core DNA Replication Machinery Family AT2G37560 63.6 2.3e-138 488.8
Lsi04g01057 . 6 378 Core DNA Replication Machinery Family AT2G01120 63.4 1.4e-134 476.5
Lsi09g01574 . 3 536 Core DNA Replication Machinery Family AT4G29910 58.6 8.6e-175 610.5
Lsi11g00986 . 1 283 Core DNA Replication Machinery Family AT1G26840 65.4 1.7e-94 342.8
Lsi11g01609 . 80 903 Core DNA Replication Machinery Family AT1G79150 54.4 4.0e-229 791.6
Lsi03g01268 . 8 940 Core DNA Replication Machinery Family AT1G44900 75.7 0.0e+00 1352.8
Lsi01g00160 . 107 687 Core DNA Replication Machinery Family AT5G46280 78.6 4.3e-259 890.6
Lsi11g01129 . 1 931 Core DNA Replication Machinery Family AT2G16440 69.3 0.0e+00 1105.9
Lsi11g00378 . 1087 1862 Core DNA Replication Machinery Family AT2G07690 73.6 0.0e+00 1080.9
Lsi01g00004 . 7 923 Core DNA Replication Machinery Family AT5G44635 61.5 2.1e-310 1061.6
Lsi02g02475 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.1 0.0e+00 1218.0
Lsi10g01424 . 36 481 Core DNA Replication Machinery Family AT2G29680 50.6 7.8e-127 451.1
Lsi10g01424 . 37 483 Core DNA Replication Machinery Family AT1G07270 52.1 1.7e-120 429.9
Lsi02g02100 . 758 1350 Core DNA Replication Machinery Family AT3G25100 76.4 2.5e-257 884.8
Lsi03g02053 . 26 672 Core DNA Replication Machinery Family AT3G09660 66.3 2.9e-237 818.5
Lsi03g02054 . 12 181 Core DNA Replication Machinery Family AT3G09660 81.2 6.6e-72 269.2
Lsi03g00736 . 22 377 Core DNA Replication Machinery Family AT2G14050 67.4 9.9e-151 530.8
Lsi03g00738 . 16 198 Core DNA Replication Machinery Family AT2G14050 53.0 2.5e-45 180.6
Lsi10g00493 . 1890 2300 Core DNA Replication Machinery Family AT2G20980 55.5 8.0e-119 424.1
Lsi02g02726 . 1 200 Core DNA Replication Machinery Family AT1G80190 67.3 9.5e-76 280.0
Lsi03g00967 . 1 145 Core DNA Replication Machinery Family AT3G12530 73.1 4.9e-61 230.7
Lsi03g00307 . 5 188 Core DNA Replication Machinery Family AT1G19080 68.5 1.9e-70 262.3
Lsi03g00307 . 5 188 Core DNA Replication Machinery Family AT3G55490 68.5 1.9e-70 262.3
Lsi05g02052 . 6 171 Core DNA Replication Machinery Family AT5G49010 57.2 1.3e-45 179.9
Lsi10g00533 . 1 1707 Core DNA Replication Machinery Family AT5G67100 52.7 0.0e+00 1597.8
Lsi02g00133 . 2 572 Core DNA Replication Machinery Family AT1G67630 53.8 5.1e-181 631.3
Lsi09g01731 . 1 409 Core DNA Replication Machinery Family AT1G67320 59.1 4.2e-162 568.2
Lsi08g00158 . 10 382 Core DNA Replication Machinery Family AT5G41880 58.0 2.9e-125 445.7
Lsi08g00157 . 57 255 Core DNA Replication Machinery Family AT5G41880 60.4 1.1e-76 284.3
Lsi01g01175 . 1 968 Core DNA Replication Machinery Family AT5G63960 69.8 0.0e+00 1424.5
Lsi03g01734 . 1 550 Core DNA Replication Machinery Family AT2G42120 57.6 1.9e-177 619.0
Lsi09g01731 . 1 409 Core DNA Replication Machinery Family AT1G67320 59.1 4.2e-162 568.2
Lsi10g01177 . 1 1996 Core DNA Replication Machinery Family AT1G08260 64.8 0.0e+00 2626.3
Lsi02g01714 . 8 1499 Core DNA Replication Machinery Family AT1G08260 65.4 0.0e+00 1877.4
Lsi02g01713 . 15 187 Core DNA Replication Machinery Family AT1G08260 55.6 1.1e-44 180.3
Lsi10g01177 . 25 2103 Core DNA Replication Machinery Family AT2G27120 62.0 0.0e+00 2599.7
Lsi02g01714 . 31 1499 Core DNA Replication Machinery Family AT2G27120 63.2 0.0e+00 1778.5
Lsi02g01713 . 24 187 Core DNA Replication Machinery Family AT2G27120 53.9 5.6e-41 167.9
Lsi02g00021 . 74 324 Core DNA Replication Machinery Family AT5G22110 78.1 5.8e-119 424.9
Lsi02g00022 . 7 218 Core DNA Replication Machinery Family AT5G22110 59.2 2.6e-58 223.4
Lsi10g01127 . 71 1019 Core DNA Replication Machinery Family AT5G22010 59.9 1.9e-285 978.8
Lsi07g01383 . 54 433 Core DNA Replication Machinery Family AT1G63160 70.3 3.4e-139 491.5
Lsi01g01707 . 1 357 Core DNA Replication Machinery Family AT5G27740 79.3 1.3e-165 579.3
Lsi04g02414 . 36 285 Core DNA Replication Machinery Family AT1G21690 62.5 1.1e-97 353.6
Lsi08g00447 . 1 363 Core DNA Replication Machinery Family AT1G77470 76.6 1.5e-156 549.3
Lsi11g00167 . 26 618 Core DNA Replication Machinery Family AT2G06510 68.8 2.3e-253 871.7
Lsi07g01137 . 32 704 Core DNA Replication Machinery Family AT2G06510 51.0 1.2e-198 689.9
Lsi06g01410 . 1 623 Core DNA Replication Machinery Family AT5G08020 68.6 2.7e-251 864.8
Lsi07g01137 . 10 813 Core DNA Replication Machinery Family AT5G45400 52.5 4.0e-232 801.6
Lsi06g01410 . 1 618 Core DNA Replication Machinery Family AT5G61000 67.4 2.7e-246 848.2
Lsi07g01137 . 5 799 Core DNA Replication Machinery Family AT4G19130 54.8 1.1e-228 790.0
Lsi06g00020 . 1 385 Core DNA Replication Machinery Family AT5G26680 78.8 2.2e-175 612.1
Lsi07g00045 . 42 374 Core DNA Replication Machinery Family AT2G25100 59.5 7.1e-106 380.6
Lsi10g01227 . 44 804 Core DNA Replication Machinery Family AT1G08130 69.2 3.8e-298 1020.8
Lsi10g01227 . 204 804 Core DNA Replication Machinery Family AT1G49250 69.6 5.9e-244 840.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004183 1 3 1 3 1 1 1 2 2 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 2 2 0 3 2 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00736 Lsi_Chr03 FPKM 6.25132 6.069643 6.856111 7.187541 12.420163 12.045478 12.570804 10.625785 10.734196 11.234529