Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00736 ATGAAGTTATTGGTTCCTTACTGTTTCCTTCTCAATGGGGATGGGGGTTTGATTATTGGGGCAGATGATGTTATTGTTACAGGAGTATTGAGTGCAAAGTGGTCCCCAGACCTCAAAGATGTTCGGTGTGACCTTGATCCAATGCTAATTGCGAATCATGTGAGAAGAACCAATGAACTAAAGGCCGAGGTTGACATCCCTGATGATATAATTATGAAATTTAGGCAGTTCTGGTCAGATTTCAAAGACACTCCTTTAAAAGGAAGAAATGCTATTCTGAGAGGTATATGCCCTCAAGTGTTTGGACTTTTTACTGTAAAGCTTGCAGTGGCTTTAACACTCATTGGAGGTGTACAACATGTGGATATTTCTGGTACTAAAGTTCGAGGAGAATCCCATCTACTGTTGGTTGGCGATCCTGGTACTGGAAAGTCACAGTTCTTGAAATTTGCTGCCAAATTGAGCAACCGAGCTGTTATTACCACTGGATTAGGAAGCACTAGTGCAGGATTGACTGTCGCTGCTGTTAAGGATGGAGGGGAATGGATGCTGGAAGCTGGGGCACTTGTACTGGCTGATGGAGGACTTTGTTGCATAGATGAAGTGGACAGATTTGATATCGTTCTTGTGCTTTTGGATACAAAAAACCCTGAATGGGATGCAGTTGTTTCATCTCATATTCTCTCCGAGTGCAAACAAGAAAAAGGAAAACGTGACAATGATCTTTCAAGTAACTGGCCTCTTACTATGCTTCGACGGGGAACTAATCTCATACCAATTCTATTTCTTGTAACAAGTACTACTAGCCAGATATACATCCAATTTGTAAAAGGATACTTCAGACCGGTCCTGACTATGGAAGCTGAGCAAATTATTTCAAACTATTATCAGCTTCAAAGAAGATCAGCCATGGATAATGCAGCCAGGACAACAGTACGCATGCTTGAAAGCTTGATACGCTTAGCACAAGCACATGCACGCCTCATGTTTAGAAATGAGGTTACCCGTCTCGATGCCATTACGGCTATTTTGTGCGTTGAATCATCCATGACAACCTCAGCTTTAGTGGATAGTGTTGGGAATGCCTTGCACTCTAATTTTACCGAGAACCCAGACGAGGAATCTGCCGTCGAGCCCATCGTCGCCGCGCCTCGCCCAGCTGCCGTCGAGCCCATCGTCGCCGCGCCTCGCCCAGCTGCCGTCGAGCCCATCGTCGCCGCGCCTCGCCCAGCTGCCGTCGAGCCCATCGTCGCCGCGCCTCGCCCAGCTGCCGTCGAGCCCATCGTCGCCGCGCCTCGCCCAGCTGCCGTCGAGCCCATCGTCGCCGCGCCTCGCCCAGCTGCCGTCGAGCCCATCGTCGCCGCGCCTCGCCCAGCTGCCGTCGAGCCCATCGTCGCCGCGCCTCGCCCAGCTGCCGTCGAGCCCATCGTCGCCGCGCCTCGCCCAGCTGCCGTCGAGCCCATCGTCGCCGCGCCTCGCCCAGCTGCCGTCGAGCCCATCGTCGCCGCGCCTCGCCCAGCTGCCGTCGAGCCCATCGTCGCCGCGCCTCGCCCAGCTGCCGTCGAGCCCATCGTCGCCGCGCCTCGCCCAGCTGCCGTCGAGCCCATCCCCGAGACATCAATTATCATCCAACGGCTAGTAAACCAAAGCCGTCGGATCACTCGACCGTTACAACTCCCAACGCTTAAAATTCTCAAAATCACCACCGTCCGATTCTCCACCACATCGAGATCTCCGCCAAATCCAACGGCATAA 1755 52.54 MKLLVPYCFLLNGDGGLIIGADDVIVTGVLSAKWSPDLKDVRCDLDPMLIANHVRRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRAVITTGLGSTSAGLTVAAVKDGGEWMLEAGALVLADGGLCCIDEVDRFDIVLVLLDTKNPEWDAVVSSHILSECKQEKGKRDNDLSSNWPLTMLRRGTNLIPILFLVTSTTSQIYIQFVKGYFRPVLTMEAEQIISNYYQLQRRSAMDNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCVESSMTTSALVDSVGNALHSNFTENPDEESAVEPIVAAPRPAAVEPIVAAPRPAAVEPIVAAPRPAAVEPIVAAPRPAAVEPIVAAPRPAAVEPIVAAPRPAAVEPIVAAPRPAAVEPIVAAPRPAAVEPIVAAPRPAAVEPIVAAPRPAAVEPIVAAPRPAAVEPIVAAPRPAAVEPIVAAPRPAAVEPIPETSIIIQRLVNQSRRITRPLQLPTLKILKITTVRFSTTSRSPPNPTA 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9886902 9923138 - Lsi03G007360.1 Lsi03g00736 658486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00736 584 Pfam MCM P-loop domain 90 204 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi03g00736 584 Gene3D - 73 203 IPR027417 -
Lsi03g00736 584 Gene3D - 204 355 IPR027417 -
Lsi03g00736 584 PANTHER DNA HELICASE MCM9 203 376 - -
Lsi03g00736 584 PANTHER DNA HELICASE MCM9 22 203 - -
Lsi03g00736 584 PRINTS Mini-chromosome maintenance (MCM) protein family signature 187 201 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi03g00736 584 PRINTS Mini-chromosome maintenance (MCM) protein family signature 129 144 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi03g00736 584 ProSiteProfiles MCM family domain profile. 88 206 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi03g00736 584 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 203 376 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lsi03g00736 584 SMART mcm 1 351 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lsi03g00736 584 Pfam MCM AAA-lid domain 271 349 IPR041562 -
Lsi03g00736 584 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 354 IPR027417 -
Lsi03g00736 584 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 22 203 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lsi03g00736 584 SMART AAA_5 130 239 IPR003593 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00736 Lsi-Chr3:9886902 Lsi03g01268 Lsi-Chr3:23425369 6.46E-28 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00736 K10738 - gmx:100776255 470.314