Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00760 ATGTTAAAGGAGTTGACAATTGGAACCCTTATATCATTGGATGCTGCTCCTGGATTGTCGTCAGATCCTTCTCCAGAATTTCCTTGGGGCAGATCACCTGCAGATCTTGCGTCTAGTAATGGACACAAAGGGATCTCTGGTTTCCTTGCAGAGGCATCATTGACCAGCTATGTTGAATCCGTATCAATGGATGACACTGTAGAAGATGGTGTGCTAGATGTTTCAAAGAGGAAACCTGTGCAAACTGTTTCTGAACGAAGGGCAACACCAGTAAATGATGGTTTTATGCCTGGTGATTTGTCCTTGAAGGATTCATTAACTGCTGTCTGCAATGCTACTCAAGCTGCTGGCCGTATACATCAGATATTTAGAGTGCAGTCATTTCAGAGGAAAAAATTATCAGAGTGTGGAACGGATGAATTTGGATCCTCAGATGATAGTGCTCTTTCGTTTGTCAAAGCCAGGACACGTAAGTCTGGACTAAGTAACAGCCCAGCCCATGCTGCTGCAGTTCAGATACAGAAAAAGTTCCGTGGTTGGAGAATGAGAAAAGAATTCTTGCTAATACGTCAAAGAATAGTGAAAATTCAGGCCCATGTCAGAGGGCACCAGGTGAGGAAGCAATATAAAAAGATTGTCTGGTCGGTAGGAATGATAGACAAGATTATTTTGAGATGGAGACGGAAGGGGAGTGGTTTGCGGGGCTTCCGATCAGAAGCAGTTGCCAAGGATCCACCCTCCGTGATGGCACCACCTACTAAAGAGGATGATTATGATTTTCTGAAGGAAGGAAGGAGGCAGACTGAGGAGAGATTTCAAAAAGCACTTACTAGAGTCAAGTCCATGGCGCAGTATCCCGAGGGACGAGACCAATACCGTAGGCTGCTTACTGTGGTCCAAAAGTGCCGAGAAACCAAGATGTTGACTCCTATTATTGGGTTGAATAGGGTGTTCTATGAACTCGATTTTATCGAAGGGAGTAGTATGGTTGTTACTAGTACTTCAGAAGAGATAATAGAAGGGGATGACATGATTGATATCGACACACTGCTGGATGACGACGCTTTGATGTCTATGACATTTGATTGA 1089 44.08 MLKELTIGTLISLDAAPGLSSDPSPEFPWGRSPADLASSNGHKGISGFLAEASLTSYVESVSMDDTVEDGVLDVSKRKPVQTVSERRATPVNDGFMPGDLSLKDSLTAVCNATQAAGRIHQIFRVQSFQRKKLSECGTDEFGSSDDSALSFVKARTRKSGLSNSPAHAAAVQIQKKFRGWRMRKEFLLIRQRIVKIQAHVRGHQVRKQYKKIVWSVGMIDKIILRWRRKGSGLRGFRSEAVAKDPPSVMAPPTKEDDYDFLKEGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCRETKMLTPIIGLNRVFYELDFIEGSSMVVTSTSEEIIEGDDMIDIDTLLDDDALMSMTFD 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10523483 10526123 - Lsi03G007600.1 Lsi03g00760 658510

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00760 362 SMART iq_5 165 187 IPR000048 GO:0005515
Lsi03g00760 362 SMART iq_5 188 210 IPR000048 GO:0005515
Lsi03g00760 362 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 3 362 - -
Lsi03g00760 362 ProSiteProfiles IQ motif profile. 189 213 IPR000048 GO:0005515
Lsi03g00760 362 Pfam IQ calmodulin-binding motif 191 210 IPR000048 GO:0005515
Lsi03g00760 362 Pfam IQ calmodulin-binding motif 167 186 IPR000048 GO:0005515
Lsi03g00760 362 ProSiteProfiles IQ motif profile. 166 195 IPR000048 GO:0005515
Lsi03g00760 362 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 3 362 - -
Lsi03g00760 362 Gene3D - 166 213 - -
Lsi03g00760 362 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 216 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00760 K21596 CAMTA; calmodulin-binding transcription activator - csv:101203707 583.178
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00760 Lsi-Chr3:10523483 Lsi09g01722 Lsi-Chr9:25791157 2.10E-56 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi03g00761 . 55 132 CAMTA Transcription Factor Family AT2G22300 84.6 3.2e-36 151.0
Lsi03g00760 . 3 357 CAMTA Transcription Factor Family AT5G09410 56.6 3.2e-99 360.1
Lsi03g00760 . 3 362 CAMTA Transcription Factor Family AT5G64220 60.2 3.7e-107 386.7
Lsi03g00761 . 10 145 CAMTA Transcription Factor Family AT5G64220 83.1 9.6e-63 239.2
Lsi09g01722 . 6 933 CAMTA Transcription Factor Family AT1G67310 52.9 1.2e-256 883.2
Lsi09g01478 . 34 930 CAMTA Transcription Factor Family AT3G16940 54.2 9.0e-258 886.7
Lsi09g01478 . 11 659 CAMTA Transcription Factor Family AT4G16150 52.4 2.1e-191 666.4
Lsi03g00760 . 3 357 CAMTA Transcription Factor Family AT5G09410 56.6 3.2e-99 360.1
Lsi03g00760 . 3 362 CAMTA Transcription Factor Family AT5G64220 60.2 3.7e-107 386.7
Lsi03g00761 . 10 145 CAMTA Transcription Factor Family AT5G64220 83.1 9.6e-63 239.2
Lsi03g00761 . 55 132 CAMTA Transcription Factor Family AT2G22300 84.6 3.2e-36 151.0
Lsi09g01722 . 6 933 CAMTA Transcription Factor Family AT1G67310 52.9 1.2e-256 883.2
Lsi09g01478 . 11 659 CAMTA Transcription Factor Family AT4G16150 52.4 2.1e-191 666.4
Lsi09g01478 . 34 930 CAMTA Transcription Factor Family AT3G16940 54.2 9.0e-258 886.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006263 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 0 4 1 0 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00760 Lsi_Chr03 FPKM 6.585127 9.552637 9.156226 8.526969 7.919156 7.828216 5.969281 8.499895 8.550653 8.101051