Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00760 ATGTTAAAGGAGTTGACAATTGGAACCCTTATATCATTGGATGCTGCTCCTGGATTGTCGTCAGATCCTTCTCCAGAATTTCCTTGGGGCAGATCACCTGCAGATCTTGCGTCTAGTAATGGACACAAAGGGATCTCTGGTTTCCTTGCAGAGGCATCATTGACCAGCTATGTTGAATCCGTATCAATGGATGACACTGTAGAAGATGGTGTGCTAGATGTTTCAAAGAGGAAACCTGTGCAAACTGTTTCTGAACGAAGGGCAACACCAGTAAATGATGGTTTTATGCCTGGTGATTTGTCCTTGAAGGATTCATTAACTGCTGTCTGCAATGCTACTCAAGCTGCTGGCCGTATACATCAGATATTTAGAGTGCAGTCATTTCAGAGGAAAAAATTATCAGAGTGTGGAACGGATGAATTTGGATCCTCAGATGATAGTGCTCTTTCGTTTGTCAAAGCCAGGACACGTAAGTCTGGACTAAGTAACAGCCCAGCCCATGCTGCTGCAGTTCAGATACAGAAAAAGTTCCGTGGTTGGAGAATGAGAAAAGAATTCTTGCTAATACGTCAAAGAATAGTGAAAATTCAGGCCCATGTCAGAGGGCACCAGGTGAGGAAGCAATATAAAAAGATTGTCTGGTCGGTAGGAATGATAGACAAGATTATTTTGAGATGGAGACGGAAGGGGAGTGGTTTGCGGGGCTTCCGATCAGAAGCAGTTGCCAAGGATCCACCCTCCGTGATGGCACCACCTACTAAAGAGGATGATTATGATTTTCTGAAGGAAGGAAGGAGGCAGACTGAGGAGAGATTTCAAAAAGCACTTACTAGAGTCAAGTCCATGGCGCAGTATCCCGAGGGACGAGACCAATACCGTAGGCTGCTTACTGTGGTCCAAAAGTGCCGAGAAACCAAGATGTTGACTCCTATTATTGGGTTGAATAGGGTGTTCTATGAACTCGATTTTATCGAAGGGAGTAGTATGGTTGTTACTAGTACTTCAGAAGAGATAATAGAAGGGGATGACATGATTGATATCGACACACTGCTGGATGACGACGCTTTGATGTCTATGACATTTGATTGA 1089 44.08 MLKELTIGTLISLDAAPGLSSDPSPEFPWGRSPADLASSNGHKGISGFLAEASLTSYVESVSMDDTVEDGVLDVSKRKPVQTVSERRATPVNDGFMPGDLSLKDSLTAVCNATQAAGRIHQIFRVQSFQRKKLSECGTDEFGSSDDSALSFVKARTRKSGLSNSPAHAAAVQIQKKFRGWRMRKEFLLIRQRIVKIQAHVRGHQVRKQYKKIVWSVGMIDKIILRWRRKGSGLRGFRSEAVAKDPPSVMAPPTKEDDYDFLKEGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCRETKMLTPIIGLNRVFYELDFIEGSSMVVTSTSEEIIEGDDMIDIDTLLDDDALMSMTFD 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10523483 10526123 - Lsi03G007600.1 Lsi03g00760 658510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00760 362 SMART iq_5 165 187 IPR000048 GO:0005515
Lsi03g00760 362 SMART iq_5 188 210 IPR000048 GO:0005515
Lsi03g00760 362 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 3 362 - -
Lsi03g00760 362 ProSiteProfiles IQ motif profile. 189 213 IPR000048 GO:0005515
Lsi03g00760 362 Pfam IQ calmodulin-binding motif 191 210 IPR000048 GO:0005515
Lsi03g00760 362 Pfam IQ calmodulin-binding motif 167 186 IPR000048 GO:0005515
Lsi03g00760 362 ProSiteProfiles IQ motif profile. 166 195 IPR000048 GO:0005515
Lsi03g00760 362 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 3 362 - -
Lsi03g00760 362 Gene3D - 166 213 - -
Lsi03g00760 362 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 216 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00760 Lsi-Chr3:10523483 Lsi09g01722 Lsi-Chr9:25791157 2.10E-56 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00760 K21596 - csv:101203707 583.178