Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00761 ATGGCTGACACAGCTTATATTCATGCAGATATCGAGCAGTTATTGATAGAAGCAAAACATCGTTGGTTACGTCCAGCTGAAATTTGTGAAATACTCCGTAACTATCCTAAGTTTCATATTGCTTCAGAGCCTCCAGATAGACCATCAAGTGGGTCACTTTTTCTTTTTGATCGTAAGGTTCTGAGGTACTTTAGAAAGGATGGACATAAATGGAGGAAGAAGAAAGATGGCAAAACTGTAAGGGAAGCTCATGAGAAGCTGAAGGTTGGAAGCATTGATGTATTGCACTGCTATTATGCCCATGGAGAAGAAAATGAGAACTTTCAAAGGCGCAGTTATTGGATGCTTGAAGAGCATTTAATGCACATAGTTTTTGTCCACTACTTGGAAGTTAAGGTAATCTATGCCCTGTTCACTGGGCTAGGTGAGTCCCATGGTTGCTTATGTTATTTGGTTCCACCAAGCTTTGAGGCACACGGGGATGAAGGCAATAGAACCAGTATTGGAGCTGTCGTTGAGACAGATGAGGTTTCATCAAGTTCACAGAAGAGCAGCTCTAGGAGTTCTAGCTATTCCAGCAGTCATAATCAAGCAGCTTCTGAAAATGCAGATTCCCCCAGTCCAACTAGCACTTTGACATCATTTTGTGAAGATGCTGATACTGGTATTCTCATTCTCCTTGGCTTCACCGAAGTTTTTACTCTACATTCATTATGGAGGTTGCTAATGAAGTTTTTACTCTGCATTTATTATGGAGGTTGCTACTTGAATTTGCAATTTTGTGCAGAAGACACTTACCAAGCAACTTCAAGATTTCACTCATTTCCCACATCGCCAAAAATGGGAAATGGTCCTCTGGTGAATAAACAAGATGCTGGTCAATCAAATTTTTATTTTCCGCATCCCTCTTCCAACAATGTTGAAGCTTGGTCATCAGTTCCTGCTGTGGATTATGTAACACAAGTTCAGAAAGATGGACTTGGGGGTAACGTTGGTGATACTGGTGTGATGGGTTCTCAGAAGACACTCAGTTCTGCCTCGTGGGAAGAGATCTTGCAACAATGTACAACTGGATTTCAAACCGTACCTTCTCATGTTTTAACCTCTTCAATTGAACCTCTGTCCTCTGGAATTGTCCTTGGACAAGAGAATTCAATTTATGGCAAGCAGTTAACCAGTAATAGTGCTATTAAAGAGGACTTTGGGAGTACTCTGACAATGACATCAAACTGGCAGGCTTCAAAGTCCTCCCAAGAAAACTTGGGTTGTGTTGAGCTACTGAATATGACTGTACATGTACATGCACACATGCACACTGATACACACATATAA 1332 41.14 MADTAYIHADIEQLLIEAKHRWLRPAEICEILRNYPKFHIASEPPDRPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVREAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKVIYALFTGLGESHGCLCYLVPPSFEAHGDEGNRTSIGAVVETDEVSSSSQKSSSRSSSYSSSHNQAASENADSPSPTSTLTSFCEDADTGILILLGFTEVFTLHSLWRLLMKFLLCIYYGGCYLNLQFCAEDTYQATSRFHSFPTSPKMGNGPLVNKQDAGQSNFYFPHPSSNNVEAWSSVPAVDYVTQVQKDGLGGNVGDTGVMGSQKTLSSASWEEILQQCTTGFQTVPSHVLTSSIEPLSSGIVLGQENSIYGKQLTSNSAIKEDFGSTLTMTSNWQASKSSQENLGCVELLNMTVHVHAHMHTDTHI 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10528298 10534413 - Lsi03G007610.1 Lsi03g00761 658511

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00761 443 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 7 134 - -
Lsi03g00761 443 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 164 221 - -
Lsi03g00761 443 Pfam CG-1 domain 17 130 IPR005559 GO:0003677
Lsi03g00761 443 ProSiteProfiles CG-1 DNA-binding domain profile. 11 137 IPR005559 GO:0003677
Lsi03g00761 443 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 262 415 - -
Lsi03g00761 443 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 7 134 - -
Lsi03g00761 443 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 262 415 - -
Lsi03g00761 443 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 164 221 - -
Lsi03g00761 443 SMART CG_1_2 14 132 IPR005559 GO:0003677
Lsi03g00761 443 MobiDBLite consensus disorder prediction 172 211 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00761 K21596 CAMTA; calmodulin-binding transcription activator - csv:101203707 588.956
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00761 Lsi-Chr3:10528298 Lsi09g01722 Lsi-Chr9:25791157 5.88E-48 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi03g00761 . 55 132 CAMTA Transcription Factor Family AT2G22300 84.6 3.2e-36 151.0
Lsi03g00760 . 3 357 CAMTA Transcription Factor Family AT5G09410 56.6 3.2e-99 360.1
Lsi03g00760 . 3 362 CAMTA Transcription Factor Family AT5G64220 60.2 3.7e-107 386.7
Lsi03g00761 . 10 145 CAMTA Transcription Factor Family AT5G64220 83.1 9.6e-63 239.2
Lsi09g01722 . 6 933 CAMTA Transcription Factor Family AT1G67310 52.9 1.2e-256 883.2
Lsi09g01478 . 34 930 CAMTA Transcription Factor Family AT3G16940 54.2 9.0e-258 886.7
Lsi09g01478 . 11 659 CAMTA Transcription Factor Family AT4G16150 52.4 2.1e-191 666.4
Lsi03g00760 . 3 357 CAMTA Transcription Factor Family AT5G09410 56.6 3.2e-99 360.1
Lsi03g00760 . 3 362 CAMTA Transcription Factor Family AT5G64220 60.2 3.7e-107 386.7
Lsi03g00761 . 10 145 CAMTA Transcription Factor Family AT5G64220 83.1 9.6e-63 239.2
Lsi03g00761 . 55 132 CAMTA Transcription Factor Family AT2G22300 84.6 3.2e-36 151.0
Lsi09g01722 . 6 933 CAMTA Transcription Factor Family AT1G67310 52.9 1.2e-256 883.2
Lsi09g01478 . 11 659 CAMTA Transcription Factor Family AT4G16150 52.4 2.1e-191 666.4
Lsi09g01478 . 34 930 CAMTA Transcription Factor Family AT3G16940 54.2 9.0e-258 886.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006263 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 0 4 1 0 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00761 Lsi_Chr03 FPKM 11.788321 11.810078 13.04127 14.642914 10.329579 10.415505 9.798618 12.104124 12.596178 12.900501