Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00768 ATGGCCACTCTGACGGTGCCCGATCAGCTTCCTCCGGTGGCCGAAGATTGCGAGCGCCTCCATAATGCATTTCAAGGTTGGGGGACGGATGAGGGGGCGATTATATCCATATTGGCTCACAGAAATGCTAAGCAGCGCAATCTGATTCGACAAACCTATACCGAAACGTATGGAGAGGATCTCTTGAAGGCACTAGACAAAGAACTTTCAAGTGATTTTGAGAGAGCTGTGCTTTTATGGACACTACATCCTGCTGAACGTGATGCATTACTAGCCAATGAAGCAATAAGGAAACTTACCCCAAAGCATTTTGTTATATTGGAAATAGCTTGTACTAGAACTCCACGGGATCTATCTCTAGTGAAGGAAGAATACCATGCTCGTTTCAAGCAGTCGATTGAAGAAGATGTTGCACAACACACTACAGGTGATTTTCGCAGGCTTCTGGTTCCTCTTGTAACTGCATATCGATATGATGGCCCTGAGGTAAATGCTACCCTAGCCACATCAGAGGCTAAGATACTTCACGAGAAAATCTCTGAGAAAGCATACAATGATGAGGAGCTCATCAGGATTATAAGCACTAGGAGCAAGGCACAACTAAATGCTACATTTAATCATTACAATGACCAATTTGGGAATGCTATTAACAAGGATCTAAAGACCGACCCCGATAACGACTACCTTAAACTTCTGAGATCTGCTATAAAGTGTCTAACTTGGCCTGAGAAATATTTTGAGAAAGTTCTTCGTTTGGCCATCAAAGGGCTTGGGACCGATGAAGAGGCTCTAACCAGAGTAGTAGTGACGCGAGCTGAGGTCGAAATGAAACGCATCGTTGAAGAGTATTATCGGAGAAACAGTGTTCCTTTGAATCAGGCGATAAAAGGCGATACCTCTGGGGATTATGAAGGGATGCTTCTTGCTTTGATTGGTAATGAGAATGGTTAA 951 43.74 MATLTVPDQLPPVAEDCERLHNAFQGWGTDEGAIISILAHRNAKQRNLIRQTYTETYGEDLLKALDKELSSDFERAVLLWTLHPAERDALLANEAIRKLTPKHFVILEIACTRTPRDLSLVKEEYHARFKQSIEEDVAQHTTGDFRRLLVPLVTAYRYDGPEVNATLATSEAKILHEKISEKAYNDEELIRIISTRSKAQLNATFNHYNDQFGNAINKDLKTDPDNDYLKLLRSAIKCLTWPEKYFEKVLRLAIKGLGTDEEALTRVVVTRAEVEMKRIVEEYYRRNSVPLNQAIKGDTSGDYEGMLLALIGNENG 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10851086 10853968 - Lsi03G007680.1 Lsi03g00768 658518

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00768 316 PANTHER ANNEXIN 7 314 - -
Lsi03g00768 316 PANTHER ANNEXIN D2 7 314 - -
Lsi03g00768 316 Gene3D Annexin 165 240 IPR037104 GO:0005509|GO:0005544
Lsi03g00768 316 PRINTS Annexin family signature 254 274 IPR001464 GO:0005509|GO:0005544
Lsi03g00768 316 PRINTS Annexin family signature 65 81 IPR001464 GO:0005509|GO:0005544
Lsi03g00768 316 PRINTS Annexin family signature 25 47 IPR001464 GO:0005509|GO:0005544
Lsi03g00768 316 PRINTS Annexin family signature 92 113 IPR001464 GO:0005509|GO:0005544
Lsi03g00768 316 PRINTS Annexin family signature 298 311 IPR001464 GO:0005509|GO:0005544
Lsi03g00768 316 SUPERFAMILY Annexin 2 314 IPR037104 GO:0005509|GO:0005544
Lsi03g00768 316 ProSitePatterns Annexin repeat signature. 258 310 IPR018252 GO:0005509|GO:0005544
Lsi03g00768 316 ProSiteProfiles Annexin repeat profile. 11 82 IPR018502 GO:0005509|GO:0005544
Lsi03g00768 316 Pfam Annexin 88 152 IPR018502 GO:0005509|GO:0005544
Lsi03g00768 316 Pfam Annexin 16 79 IPR018502 GO:0005509|GO:0005544
Lsi03g00768 316 Pfam Annexin 171 233 IPR018502 GO:0005509|GO:0005544
Lsi03g00768 316 Pfam Annexin 246 310 IPR018502 GO:0005509|GO:0005544
Lsi03g00768 316 ProSiteProfiles Annexin repeat profile. 83 154 IPR018502 GO:0005509|GO:0005544
Lsi03g00768 316 PRINTS Plant annexin signature 226 244 IPR009118 -
Lsi03g00768 316 PRINTS Plant annexin signature 161 181 IPR009118 -
Lsi03g00768 316 PRINTS Plant annexin signature 119 133 IPR009118 -
Lsi03g00768 316 ProSiteProfiles Annexin repeat profile. 166 237 IPR018502 GO:0005509|GO:0005544
Lsi03g00768 316 ProSiteProfiles Annexin repeat profile. 241 312 IPR018502 GO:0005509|GO:0005544
Lsi03g00768 316 SMART annex3 100 152 IPR018502 GO:0005509|GO:0005544
Lsi03g00768 316 SMART annex3 183 235 IPR018502 GO:0005509|GO:0005544
Lsi03g00768 316 SMART annex3 258 310 IPR018502 GO:0005509|GO:0005544
Lsi03g00768 316 SMART annex3 28 80 IPR018502 GO:0005509|GO:0005544
Lsi03g00768 316 Gene3D Annexin 1 82 IPR037104 GO:0005509|GO:0005544
Lsi03g00768 316 Gene3D Annexin 83 153 IPR037104 GO:0005509|GO:0005544
Lsi03g00768 316 Gene3D Annexin 242 313 IPR037104 GO:0005509|GO:0005544
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00768 K17098 ANNAT; annexin D - csv:101218520 572.007
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00768 Lsi-Chr3:10851086 Lsi03g00919 Lsi-Chr3:17361072 1.26E-144 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1056 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi03g00768 Csa07g00545 . Cme01g00246 . . . . . . . . . . . . . . . . . . . . . . . . Cla09g01506 Cam09g1655 Cec09g1662 Cco09g1712 . . Cre09g1546 . . Chy01g00259 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001965 1 3 3 2 1 2 3 2 2 2 2 2 3 2 3 3 2 4 3 2 2 2 2 2 2 2 1 3 2 1 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00768 Lsi_Chr03 FPKM 18.021225 16.046835 12.058207 12.110656 18.448828 18.037899 17.958513 15.211066 14.167795 12.185237