Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00773 ATGAAAGTTGTATATGTGGTGGTGTTGCTTAGCTTGGCCGCCACCGCCGTGCATGGCCAAGGAACACGACTCGGCTTTTATCGTGCCACGTGCCCTGAAGTCGAATCCATCGTCAGATCCACCGTTCGATTCCATTTTCAATTGGATCCCTCAATTGCTCCTGGGTTATTAAGAATGCACTCACATGACTGCTTTGTTCGAGGATGTGATGCTTCTGTGCTTCTTGCCGGTCCCAATTCTGAGAGGACGGCTGTGCCTAACCTTACTTTGAGAGGGTTTGAGGTCATTGACGATGCCAAGTCACAGCTTGAGGATATCTGCCCAGGTGTCGTGTCATGCGCTGATATTCTTGCTCTTGCTGCTCGTGACTCTGTGGTTCTGGTAGAGGTTAAGTTGCCTGGTTTTTCAGATTCCATTGAAGTTCAGAAGGAGAAGTTCAGGTCTATGGGTCTCAACACCCATGACCTTGTCACTCTCGCAGGTGCTCATACCATCGGTACTGCATCATGTCGTTTTTTTAGTTACAGACTCCACAACTTCACGACTGCAAACGGCGCTGATCCGACTCTTAACCCATCGCTTGTCGGTCAGCTACGAGCACTTTGCCCTGAAGATGGAGATGGCTCAAACAGAGTCGAACTTGACATCAATAGTCCCGAAAAATTCGACCTGTCGTTCTACGAAAACTTGAGACATGGGGGTGGGATCTTGGAGTCTGATCAATTGCTGTGGAATGATGACTCTACTCGCCCTATCATCCGACATTACTTGGGTATGGGAATTTTAAGGGGACGTTCTAGCTTCAGAGTTGAGTTTGGGAGATCCATGGTTAAAATGAGCAATGCACAAGTTAAAACTGGCATTTTTGGTGAAATTCGAAGGGTTTGCTCTGAGGTGAGTCTTACTACATTATTCGTAATACTAGTAAGCTCGAATTTTTATGCAGTTTTGAAGTATTAA 960 46.46 MKVVYVVVLLSLAATAVHGQGTRLGFYRATCPEVESIVRSTVRFHFQLDPSIAPGLLRMHSHDCFVRGCDASVLLAGPNSERTAVPNLTLRGFEVIDDAKSQLEDICPGVVSCADILALAARDSVVLVEVKLPGFSDSIEVQKEKFRSMGLNTHDLVTLAGAHTIGTASCRFFSYRLHNFTTANGADPTLNPSLVGQLRALCPEDGDGSNRVELDINSPEKFDLSFYENLRHGGGILESDQLLWNDDSTRPIIRHYLGMGILRGRSSFRVEFGRSMVKMSNAQVKTGIFGEIRRVCSEVSLTTLFVILVSSNFYAVLKY 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10988369 10995590 + Lsi03G007730.1 Lsi03g00773 658523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00773 319 Pfam Peroxidase 38 131 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00773 319 Gene3D - 26 129 - -
Lsi03g00773 319 CDD secretory_peroxidase 23 299 IPR033905 GO:0004601|GO:0042744
Lsi03g00773 319 ProSiteProfiles Plant heme peroxidase family profile. 21 300 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00773 319 Gene3D - 130 299 - -
Lsi03g00773 319 PANTHER PEROXIDASE 25-RELATED 131 298 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00773 319 PRINTS Plant peroxidase signature 55 75 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00773 319 PRINTS Plant peroxidase signature 213 228 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00773 319 PRINTS Plant peroxidase signature 31 50 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00773 319 PRINTS Plant peroxidase signature 91 104 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00773 319 PRINTS Plant peroxidase signature 274 287 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00773 319 PRINTS Plant peroxidase signature 110 120 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00773 319 PRINTS Plant peroxidase signature 229 246 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00773 319 Gene3D Peroxidase, domain 2 133 279 - -
Lsi03g00773 319 PANTHER PEROXIDASE 131 298 - -
Lsi03g00773 319 PANTHER PEROXIDASE 3 128 - -
Lsi03g00773 319 PRINTS Haem peroxidase superfamily signature 155 170 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00773 319 PRINTS Haem peroxidase superfamily signature 53 67 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00773 319 PRINTS Haem peroxidase superfamily signature 215 230 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00773 319 ProSitePatterns Peroxidases proximal heme-ligand signature. 155 165 IPR019793 -
Lsi03g00773 319 SUPERFAMILY Heme-dependent peroxidases 23 299 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi03g00773 319 PANTHER PEROXIDASE 25-RELATED 3 128 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00773 Lsi-Chr3:10988369 Lsi06g00967 Lsi-Chr6:19619446 1.78E-91 dispersed
Lsi03g00773 Lsi-Chr3:10988369 Lsi03g00774 Lsi-Chr3:11036102 1.34E-137 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00773 K00430 - csv:101202985 495.352