Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00774 ATGGCTGATTCAGTCTTCCCGTTGAAAAATGGCTACTTCATAGCTATGTTTGTGCTATTCACCTTCGGTAGCACCACCGTGCATAGCCAGGGCACACGCATTGGCTTCTACTCCAACTCTTGTCCTCAAGCCGAGTCTATCGTTGCATCTACTGTCCGATCTCATTTTCAGTCTGACCCTAGGATTGCTCCAGGTTTGTTAAGAATGCACTTCCATGATTGCTTCGTACGAGGTTGTGATGCCTCTGTGCTCCTTGCTGGCTCTAATAGCGAGAGGACGGCACCACCCAACCTTTCGTTAAATGGGTTTGAAGTAATTGACGATGCTAAGTCTCAGCTTGAAGCTGCTTGTCCTGGTGTTGTATCTTGTGCTGACATTCTAACTCTTGCTGCTCGTGACTCCGTAGTTTTGACAAGTGGACTACGTTGGGGAGTGCCCACGGGACGAAGGGATGGCACAATTTCAGTGGCTTCAGAAGCTAATAACTTGCCTGGATTTACAGATTCAATTGACGTTCAAAAGCAAAAATTCAGCGACAAAGGTCTCAACACTCAAGACCTTGTCACTCTCGTGGGTGGACACACAATTGGCACAACACAATGCCAATTCTTCAGCTACAGACTCTTCAACTTCACAGGAAACGGTCCAGATTCAAGCATGGACCCAGCTTTCGTGACTCAGATGCAGGCGCTGTGTCCTCAGAACGGCGATGGGAGCCGCAGGGTTGCGTTGGACACAGGCAGTGCCGGCCGGTTTGACACGATGTTCTTCTCAAACTTGAGGAACGGCCGTGGGGTTTTGGAGTCTGATCAAAAGCTATGGACCGATGCTTCCACTCGCACTTTTGTCCAACGCTTTCTGGGTTTGAGAGGCGTCTTGGGTTTGACCTTCAATCTTGAGTTTGGCAAATCTATGGTTAAAATGAGTAACATTGGAGTTAAGACTGGAACTCAAGGAGAAATTCGTAAAGTTTGTTCGGCAGTTAATTAA 990 47.78 MADSVFPLKNGYFIAMFVLFTFGSTTVHSQGTRIGFYSNSCPQAESIVASTVRSHFQSDPRIAPGLLRMHFHDCFVRGCDASVLLAGSNSERTAPPNLSLNGFEVIDDAKSQLEAACPGVVSCADILTLAARDSVVLTSGLRWGVPTGRRDGTISVASEANNLPGFTDSIDVQKQKFSDKGLNTQDLVTLVGGHTIGTTQCQFFSYRLFNFTGNGPDSSMDPAFVTQMQALCPQNGDGSRRVALDTGSAGRFDTMFFSNLRNGRGVLESDQKLWTDASTRTFVQRFLGLRGVLGLTFNLEFGKSMVKMSNIGVKTGTQGEIRKVCSAVN 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11036102 11038698 - Lsi03G007740.1 Lsi03g00774 658524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00774 329 PRINTS Plant peroxidase signature 41 60 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00774 329 PRINTS Plant peroxidase signature 243 258 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00774 329 PRINTS Plant peroxidase signature 303 316 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00774 329 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00774 329 PRINTS Plant peroxidase signature 65 85 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00774 329 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00774 329 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00774 329 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00774 329 PRINTS Plant peroxidase signature 259 276 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00774 329 PANTHER PEROXIDASE 25-RELATED 14 327 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00774 329 PANTHER PEROXIDASE 14 327 - -
Lsi03g00774 329 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Lsi03g00774 329 CDD secretory_peroxidase 33 328 IPR033905 GO:0004601|GO:0042744
Lsi03g00774 329 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00774 329 PRINTS Haem peroxidase superfamily signature 245 260 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00774 329 PRINTS Haem peroxidase superfamily signature 63 77 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00774 329 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00774 329 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00774 329 ProSiteProfiles Plant heme peroxidase family profile. 31 329 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00774 329 SUPERFAMILY Heme-dependent peroxidases 33 329 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi03g00774 329 Gene3D Peroxidase, domain 2 164 308 - -
Lsi03g00774 329 Pfam Peroxidase 48 286 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00774 329 ProSitePatterns Peroxidases active site signature. 63 74 IPR019794 GO:0004601
Lsi03g00774 329 Gene3D - 36 329 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00774 Lsi-Chr3:11036102 Lsi06g00967 Lsi-Chr6:19619446 6.79E-119 dispersed
Lsi06g00966 Lsi-Chr6:19613844 Lsi03g00774 Lsi-Chr3:11036102 9.43E-46 dispersed
Lsi11g01470 Lsi-Chr11:23267623 Lsi03g00774 Lsi-Chr3:11036102 2.66E-75 dispersed
Lsi03g00773 Lsi-Chr3:10988369 Lsi03g00774 Lsi-Chr3:11036102 1.34E-137 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00774 K00430 - csv:101217567 567.385