Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00777 ATGAGCGGGCGGATCGTGAGCGACGAGGCAGCGAGACAGTCGGAGCAACGAAATGAGGCTTTTAGCGTTGTACCACCCTCGAAGGTGGGTGTGCCGCCGAGGAAGAACATATGGGAGGAGTTTAATTCTGTGGTGAAAGAGACTTTTTTCTCTGATCAGCCTCTTCGTCATTTCAAGGACCAACCTAAACGAAAGAAGGTTTCTCTCTTTGTCCAAGGTCTTTTCCCCATATTCCAATGGGGAAGGGGATATAACTTTCATAAGTTCAAAGGAGACCTCATTGCTGGCCTAACAATTGCTAGTCTATGCATTCCTCAAGACATTGGATATGCTAAGCTAGCTAATTTACCCCCTGAAAACGGACTTTACAGTAGCTTTGTCCCGCCATTAGTATACGCAGTGATGGGGAGCTCTAGGGATATAGCAATTGGCCCCGTTGCTGTCGTATCGCTTTTGCTCGGGACACTACTGGCGCAGGTGTACGACCCGGTGAAAGAGGTGGAGCAGTACAAACGACTGGCTTACACAGCGACTTTCTTCGCCGGAGTTACTCAGTTGGCTCTAGGGTTTCTCCGGCTGGGATTCTTGATTGACTTTCTGTCTCACGCTGCCGTTGTCGGGTTCATGGGTGGCGCGGCCGTGACCATCGCCCTTCAGCAGCTGAAAGGTCTTCTTGGCATAGCAAACTTCACCAAGAAAACTGATATCATTTCTGTGATGCGCTCTGTTTGGAGTAATGTGCACCATGGGTGGAACTGGGAGACTATACTCATAGGCGTTTCATTTTTGGCCTTTCTTTTGGCTACAAAATACATTGTAAAACACTTAGATAAAGGAATAAATCCACCATCCCTTGATAAGATATTCTTCCATGGAGACAATCTCACCAAAGGTTTCAAGATTGGAGTGGTTGCTGGTTTGATTGCCCTAACGGAAGCAGTGGCAATTGCTAGAACATTTGCAGACCTAAAAGACTATGAGATTGATGGTAATAAAGAAATGATGGCTCTTGGAACCATGAACATTGCTGGCTCCATGACTTCTTGCTATGTCGCCACAGGATCGTTCTCTCGGTCGGCGGTCAACTATATGGCTGGCTGCAACACACCGATGTCGAACATCGTCATGGCATGCGTCGTTCTCTTGACATTAGAGCTCATCACACCCCTTTTCAAGTACACCCCTAATGCCATTCTCGCCTCCATCATTATTTGCGCAGTCATCGGTCTCATTGACATCGATGCTGTGATTTTGCTATGGAAGATCGACAAATTCGACTTCATTGCTTGCATGGGGGCTTTCTTCGGCGTTAGTTTGTCATTGTTCAAAATTCTATTGCAAGTAACAAGACCGAGAATTGCGTTGCTTGGGAAGCTCCCAAAGATTCCTATTTTTAGAAACATTTTGCAGTACCCTGGCGCAAAGAAGATTGCAGGAGTTCTAATGAATGTTTGGAGAGTTATCATTCTTAAACTTTTGATATTGAGATGGCTGGCAGATGAAACAGAGAAGCTAGAAGACCAATCTTTGCCGATCAAAGTTGTGGTCGTCGACATGTCTCCCGTATCTGATATCGACACGAGCGGCATCCATGCCTTAGAGGGATTGCAGTCTCATTTGCATAAGAAGGAAATTACACTTGCACTTGCAAATCCAGGGCCAGTGATCATGGAGAAGATGTTAGCTGCAGACTTTGATAAACTTATAGGAGACGACAACATTTTCCTCACTGTTAACGAAGCTATTAAGGTTTATGCCCCAGATGCTGTTCTTGATCCTTAA 1782 45.74 MSGRIVSDEAARQSEQRNEAFSVVPPSKVGVPPRKNIWEEFNSVVKETFFSDQPLRHFKDQPKRKKVSLFVQGLFPIFQWGRGYNFHKFKGDLIAGLTIASLCIPQDIGYAKLANLPPENGLYSSFVPPLVYAVMGSSRDIAIGPVAVVSLLLGTLLAQVYDPVKEVEQYKRLAYTATFFAGVTQLALGFLRLGFLIDFLSHAAVVGFMGGAAVTIALQQLKGLLGIANFTKKTDIISVMRSVWSNVHHGWNWETILIGVSFLAFLLATKYIVKHLDKGINPPSLDKIFFHGDNLTKGFKIGVVAGLIALTEAVAIARTFADLKDYEIDGNKEMMALGTMNIAGSMTSCYVATGSFSRSAVNYMAGCNTPMSNIVMACVVLLTLELITPLFKYTPNAILASIIICAVIGLIDIDAVILLWKIDKFDFIACMGAFFGVSLSLFKILLQVTRPRIALLGKLPKIPIFRNILQYPGAKKIAGVLMNVWRVIILKLLILRWLADETEKLEDQSLPIKVVVVDMSPVSDIDTSGIHALEGLQSHLHKKEITLALANPGPVIMEKMLAADFDKLIGDDNIFLTVNEAIKVYAPDAVLDP 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11172419 11179731 - Lsi03G007770.1 Lsi03g00777 658527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00777 593 ProSiteProfiles STAS domain profile. 503 585 IPR002645 -
Lsi03g00777 593 Pfam Sulfate permease family 89 288 IPR011547 GO:0016021
Lsi03g00777 593 PANTHER SULFATE TRANSPORTER 14 274 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lsi03g00777 593 PANTHER SULFATE TRANSPORTER 272 592 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lsi03g00777 593 PANTHER SULFATE TRANSPORTER 1.2-LIKE 14 274 - -
Lsi03g00777 593 PANTHER SULFATE TRANSPORTER 1.2-LIKE 272 592 - -
Lsi03g00777 593 Gene3D STAS domain 450 587 IPR036513 -
Lsi03g00777 593 MobiDBLite consensus disorder prediction 1 21 - -
Lsi03g00777 593 CDD STAS_SulP_like_sulfate_transporter 498 578 - -
Lsi03g00777 593 Pfam STAS domain 494 581 IPR002645 -
Lsi03g00777 593 SUPERFAMILY SpoIIaa-like 509 583 IPR036513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00777 Lsi-Chr3:11172419 Lsi09g00959 Lsi-Chr9:12534076 0 dispersed
Lsi03g00777 Lsi-Chr3:11172419 Lsi02g02261 Lsi-Chr2:29179045 1.56E-180 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00777 K17470 - csv:101202746 1018.07