Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00789 ATGGAATTGAAATTATGTAATGGGGCCGATGGAGTCATTGTTGGAGCAATTGTTGTTGCTGCTGCTTTGCTGGTTGTTGTGCCTGCTATTGCATTTACTCTTTGGCGACGAAAAACTCCACAGGATCATTTCTTTGATGTACCTGCTGAAGAAGATCCTGAAATTAACCTGGGGCAGCTCAAAAAATATTCTCTACGCGAGCTGCAAGTTGCCACTGATTATTTTAGCCAACAGAACATTTTAGGCAAAGGTGGATTTGGCAAGGTCTATAAAGGTCGTTTGGCTGATGGTTCTCTTGTGGCTGTAAAACGATTGAAGGAGGAGCGTGCTGAGGTTGGAGAGCTTCAATTTCAGACTGAAGTAGAGCTGATCAGCATGGCTGTCCATCGTAATCTGCTCCGTCTAAATGGATTTTGCATGTCACCAACTGAACGATTGCTTGTCTATCCTTATATGGCTAATGGAAGTCTAGCATCATGTTTAAGAGAGCGTAAGCAATGCCAGCCACCACTCAACTGGGAAATACGTAAACGAGTTGCTATAGGGGCTGCACGGGGACTTGAATATTTACATAACCATTGTGATCCTAAAGTTATTCACCGTGATGTGAAAGCTGCAAATATATTATTAGATGATGGATTTGAGGCTGTTGTTGGAGATTTTGGGTTGGCTAAACTCATGAACTACAAGGATACTCATGTCACAACTGCTGTTCGTGGAACTATTGGGCATATAGCCCCAGAGTACCTCTCGTCTGGAAAGTCTTCTGAAAAAACTGATGTTTTTGGTTATGGAGTAATGCTTCTTGAACTCGTAACTGGACAGAAAGCCTTTGATCTTGCTCGGTTAGCAAAAGATGATGATGTCATGTTGCTTGATTGGGTAAAAGGACTTCTGAATGATAAGAAACTGGAAACGTTGGTTGATCCCGATCTCGGAGGCAATTACGTAGAGGAAGAACTGGAGCAGGTAATTCAAGTTGCACTGCTTTGCACACAAAGCTCCCCTGTGGAGCGACCTAAGATGTCCGAGGTGTTGCAAATGCTGGAAGGCGATGGTTTAGCTGAAAGATGGGAGGAATGGCAGAAAGAAGAGAGCTCACGCCAAAACTTCAATAATATGGTGCATTCTTACCACGGGAGTAGAACTCCACAGTTTATTGATTCCACTTCTGATATTGCTCCTGATGTGCTGTCTGGTCCAAGATGA 1209 43.42 MELKLCNGADGVIVGAIVVAAALLVVVPAIAFTLWRRKTPQDHFFDVPAEEDPEINLGQLKKYSLRELQVATDYFSQQNILGKGGFGKVYKGRLADGSLVAVKRLKEERAEVGELQFQTEVELISMAVHRNLLRLNGFCMSPTERLLVYPYMANGSLASCLRERKQCQPPLNWEIRKRVAIGAARGLEYLHNHCDPKVIHRDVKAANILLDDGFEAVVGDFGLAKLMNYKDTHVTTAVRGTIGHIAPEYLSSGKSSEKTDVFGYGVMLLELVTGQKAFDLARLAKDDDVMLLDWVKGLLNDKKLETLVDPDLGGNYVEEELEQVIQVALLCTQSSPVERPKMSEVLQMLEGDGLAERWEEWQKEESSRQNFNNMVHSYHGSRTPQFIDSTSDIAPDVLSGPR 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11467728 11476210 + Lsi03G007890.1 Lsi03g00789 658539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00789 402 ProSitePatterns Protein kinases ATP-binding region signature. 81 103 IPR017441 GO:0005524
Lsi03g00789 402 SUPERFAMILY Protein kinase-like (PK-like) 55 350 IPR011009 -
Lsi03g00789 402 PANTHER LRR RECEPTOR KINASE SERK2 10 402 - -
Lsi03g00789 402 Pfam Protein kinase domain 76 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g00789 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Lsi03g00789 402 Gene3D Phosphorylase Kinase; domain 1 44 151 - -
Lsi03g00789 402 ProSiteProfiles Protein kinase domain profile. 75 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g00789 402 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 402 - -
Lsi03g00789 402 SMART serkin_6 75 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g00789 402 Gene3D Transferase(Phosphotransferase) domain 1 152 369 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00789 Lsi-Chr3:11467728 Lsi03g00939 Lsi-Chr3:17977854 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83478 PF00069 Pkinase 2.10E-45 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00789 K13416 - csv:101216386 698.738