Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00800 ATGGCGAAGTTAATGATTCTTCTCAATCTCTTGATGTTCCTTGGTTGCTTTGTAGCCATTTCTCAAGGCCAATTGAAGTTTGGATTCTATGCTCGATCTTGTCCTGCAGCGGAATCCATCGTTCGTAGCGTCGTAAACAACGCCGTTCGCAACAATGCCAACATGGCTGCCGTATTGCTTCGACTCCACTTCCACGACTGCATCGTCGAGGGTTGCGACGGTTCAATCTTAGTCGACAACGGGCCGAGTTCGGAGAAACTTGCTTTTGGGCATCAAGGGGTGGGGGGTTTTGAAGTAATAGAAAGAGCAAAGGGAGAATTAGAAACACAATGTCCAGGAGTAGTTTCTTGTGCTGACATCGTGGCTATGGCTGCTAGAGATGCCATTGTTATGGCAAATGGACCGGATTACGAGGTTCTGACCGGTCGGAGAGACGGTAGGGTTTCGGATATTTCTCTGGCGGATGAGCTGCCGGATGTGAGTGATTCAATTCAAGTTTTGAAGAACAAATTTGCTGAGAAAGGGATGACTGACAAAGACTTGGTTTTACTCACTGCGGCACACACAATTGGAACCACAGCATGCTTCTTCATGACAAAACGCCTATACGACTTCTTCCCGGGAGGCAGCGGCGGATCGGACCCGGACATAAACCCGACCCTGCTGCCGGAGCTGAAGTCACAATGCCCTCGAAATGGCGACGTGAATGCCCGCCTTGGCATCGACCGTGGTAGTCCCCGCACATTCGACATCAACATTCTTCAAAACATAAGAAATGGTTTCGCCGTCCTCGCCTCCGATGCTCGTCTAAATGACGACCCATCGACCCGAGCCGTCATCGACTCATACTTGAGCCCCCTAGCCCCTATTCTTGGCCCTTCATTTCAGGACGATTTTATCAACTCCATTGTGAGAATGGGCCAGATTGGGACCAAAACTGGCTCTCAAGGAGAGATTCGAAGGGTTTGTTCTGCTTTTAACTCAGGGTAA 990 49.7 MAKLMILLNLLMFLGCFVAISQGQLKFGFYARSCPAAESIVRSVVNNAVRNNANMAAVLLRLHFHDCIVEGCDGSILVDNGPSSEKLAFGHQGVGGFEVIERAKGELETQCPGVVSCADIVAMAARDAIVMANGPDYEVLTGRRDGRVSDISLADELPDVSDSIQVLKNKFAEKGMTDKDLVLLTAAHTIGTTACFFMTKRLYDFFPGGSGGSDPDINPTLLPELKSQCPRNGDVNARLGIDRGSPRTFDINILQNIRNGFAVLASDARLNDDPSTRAVIDSYLSPLAPILGPSFQDDFINSIVRMGQIGTKTGSQGEIRRVCSAFNSG 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11811148 11830941 - Lsi03G008000.1 Lsi03g00800 658550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00800 329 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Lsi03g00800 329 Gene3D - 28 327 - -
Lsi03g00800 329 PANTHER PEROXIDASE 11 325 - -
Lsi03g00800 329 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601
Lsi03g00800 329 PRINTS Plant peroxidase signature 95 108 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00800 329 PRINTS Plant peroxidase signature 240 255 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00800 329 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00800 329 PRINTS Plant peroxidase signature 256 273 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00800 329 PRINTS Plant peroxidase signature 301 314 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00800 329 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00800 329 PRINTS Plant peroxidase signature 114 124 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00800 329 PRINTS Plant peroxidase signature 133 148 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00800 329 PRINTS Plant peroxidase signature 179 191 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00800 329 SUPERFAMILY Heme-dependent peroxidases 24 327 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi03g00800 329 CDD secretory_peroxidase 24 326 IPR033905 GO:0004601|GO:0042744
Lsi03g00800 329 PANTHER PEROXIDASE 25-RELATED 11 325 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00800 329 PRINTS Haem peroxidase superfamily signature 180 195 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00800 329 PRINTS Haem peroxidase superfamily signature 115 132 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00800 329 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00800 329 PRINTS Haem peroxidase superfamily signature 133 145 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00800 329 PRINTS Haem peroxidase superfamily signature 242 257 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00800 329 ProSitePatterns Peroxidases proximal heme-ligand signature. 180 190 IPR019793 -
Lsi03g00800 329 Gene3D Peroxidase, domain 2 158 306 - -
Lsi03g00800 329 ProSiteProfiles Plant heme peroxidase family profile. 24 327 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00800 329 Pfam Peroxidase 41 284 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00800 Lsi-Chr3:11811148 Lsi06g00967 Lsi-Chr6:19619446 5.46E-82 dispersed
Lsi03g00800 Lsi-Chr3:11811148 Lsi10g00150 Lsi-Chr10:2437499 2.33E-77 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00800 K00430 - csv:101221831 515.768