Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00810 ATGGCAGATGGTGAAGATATTCAACCTCTTGTTTGTGATAATGGAACTGGAATGGTCAAGGCTGGATTTGCTGGTGACGATGCTCCAAGGGCTGTGTTTCCTAGTATCGTTGGCAGACCACGTCACACTGGTGTGATGGTTGGAATGGGCCAGAAGGATGCCTATGTTGGTGATGAAGCTCAGTCAAAAAGGGGTATTCTTACATTGAAATACCCAATTGAGCATGGGATTGTAAGCAACTGGGATGACATGGAAAAGATTTGGCATCACACATTCTACAATGAGCTTCGTGTTGCTCCTGAAGAGCATCCGGTACTTCTGACTGAAGCACCACTCAACCCAAAGGCAAACAGGGAGAAGATGACTCAGATCATGTTTGAAACCTTCGACGTACCTGCTATGTATGTCGCAATCCAGGCCGTTTTATCTCTCTATGCCAGTGGTCGAACAACAGGTATTGTGTTGGATTCTGGTGATGGAGTAAGCCACACGGTGCCTATATATGAGGGGTTTTCACTCCCTCATGCAATCCTACGTCTCGACCTTGCTGGTCGTGATTTGACTGATGCTTTGATGAAAATTCTTACCGAAAGAGGTTACATGTTCACGACAACAGCAGAGCGGGAAATTGTTCGTGATGTGAAGGAGAAGCTTGCATATGTGGCCCTTGATTATGAGCAAGAACTGGAGACAGCCAGGACTAGTTCGGCCATTGAGAAAAGCTATGAACTACCCGATGGGCAGGTGATTACGATTGGAGCTGAGAGATTCCGTTGCCCAGAAGTACTTTTCCAGCCATCTCTGATCGGCATGGAATCACCCGGAATCCATGAAACCACATACAACTCCATCATGAAGTGTGATGTTGATATCAGGAAGGACTTGTATGGTAACATCGTCCTCAGTGGTGGTACGACGATGTTCCCCGGCATTGCTGATCGGATGAGCAAAGAAATCACAGCTCTCGCTCCGAGCAGCATGAAGATCAAGGTTGTTGCTCCTCCGGAAAGGAAGTACAGTGTTTGGATTGGAGGATCCATCCTAGCATCCCTCAGTACCTTCCAACAGATGTGGATAACGAAGGCTGAATACGACGAGTCGGGTCCGGCTATAGTTCACAGGAAATGCTTCTGA 1134 47.27 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFDVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDVKEKLAYVALDYEQELETARTSSAIEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMESPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKAEYDESGPAIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12156301 12159754 - Lsi03G008100.1 Lsi03g00810 658560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00810 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Lsi03g00810 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Lsi03g00810 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Lsi03g00810 377 PANTHER ACTIN 1 376 IPR004000 -
Lsi03g00810 377 Pfam Actin 5 377 IPR004000 -
Lsi03g00810 377 Gene3D - 10 371 - -
Lsi03g00810 377 Gene3D - 140 340 - -
Lsi03g00810 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Lsi03g00810 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Lsi03g00810 377 SMART actin_3 7 377 IPR004000 -
Lsi03g00810 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Lsi03g00810 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Lsi03g00810 377 PANTHER - 1 376 - -
Lsi03g00810 377 PRINTS Actin signature 51 62 IPR004000 -
Lsi03g00810 377 PRINTS Actin signature 238 254 IPR004000 -
Lsi03g00810 377 PRINTS Actin signature 63 85 IPR004000 -
Lsi03g00810 377 PRINTS Actin signature 142 161 IPR004000 -
Lsi03g00810 377 PRINTS Actin signature 117 130 IPR004000 -
Lsi03g00810 377 PRINTS Actin signature 28 37 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02566 Lsi-Chr2:32130208 Lsi03g00810 Lsi-Chr3:12156301 1.63E-67 dispersed
Lsi03g00810 Lsi-Chr3:12156301 Lsi10g01374 Lsi-Chr10:17888505 0 dispersed
Lsi06g01342 Lsi-Chr6:24001247 Lsi03g00810 Lsi-Chr3:12156301 4.58E-43 dispersed
Lsi11g00336 Lsi-Chr11:3465407 Lsi03g00810 Lsi-Chr3:12156301 2.67E-29 dispersed
Lsi03g00810 Lsi-Chr3:12156301 Lsi10g00709 Lsi-Chr10:9906107 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00810 K10355 - csv:101214459 755.747