Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00820 ATGGATCAATCAGAGCGTTCTCAGCATCAGCAACAATCACAGCAGCCTGCAGGTGGTGTCGGTGCAGGCCAATTACCATATTCTAATCCTTACCAAACAGCTTCGATGGTGGCTTCCGGGACTCCTGCTATTACGATTCCCCCAACTCAGCCACCGTCCAGTTTCTCTAATTCTCCCCACCAGCTTGCCTACCAGCAGGCTCAGCACTTCCACCACCAGCAACAGCAACAACAACAACAACAGCTCCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTTAAGAACCACAGTCTCCCCCTTGCTCGAATCAAGAAAATAATGAAAGCAGATGAAGACGTCCGAATGATTTCAGCTGAAGCACCCGTCATATTCGCAAAGGCATGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAATGATATTGCAGCTGCAATTTCAAGGACCGATGTCTTCGATTTCTTGGTTGATATCATTCCTAGAGATGAACTGAAAGAGGAAGGTCTCGGAATCACAAAAGGTTCCATTCCCGTAGTTGGTTCCCCAGCTGATCTTCCTTATTACTATGTTCCATCGCAGCATCCGGTGGGTGCTACAGGAATGATCATGGGGAAGCAATTAGATCAAGCGAACATGTACGGTGGCACTGCTCAACAGCCCCGACCATCGATGCCTTTCATGCCATGGCCGCATGCTCAACCTCAGCAGCAGCAACAAACTCAGCAGCAAAGTGATGCATAG 801 47.19 MDQSERSQHQQQSQQPAGGVGAGQLPYSNPYQTASMVASGTPAITIPPTQPPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKGSIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGGTAQQPRPSMPFMPWPHAQPQQQQQTQQQSDA 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12431968 12432768 - Lsi03G008200.1 Lsi03g00820 658570

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00820 266 Gene3D Histone, subunit A 64 181 IPR009072 GO:0046982
Lsi03g00820 266 MobiDBLite consensus disorder prediction 1 19 - -
Lsi03g00820 266 MobiDBLite consensus disorder prediction 233 266 - -
Lsi03g00820 266 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 9 260 - -
Lsi03g00820 266 MobiDBLite consensus disorder prediction 55 76 - -
Lsi03g00820 266 MobiDBLite consensus disorder prediction 26 44 - -
Lsi03g00820 266 MobiDBLite consensus disorder prediction 250 266 - -
Lsi03g00820 266 Pfam Core histone H2A/H2B/H3/H4 56 166 IPR007125 GO:0003677
Lsi03g00820 266 MobiDBLite consensus disorder prediction 1 76 - -
Lsi03g00820 266 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 9 260 - -
Lsi03g00820 266 SUPERFAMILY Histone-fold 59 175 IPR009072 GO:0046982
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00820 K08066 NFYC, HAP5; nuclear transcription factor Y, gamma - csv:101213813 412.149
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00820 Lsi-Chr3:12431968 Lsi06g00137 Lsi-Chr6:1329161 8.67E-86 dispersed
Lsi03g00820 Lsi-Chr3:12431968 Lsi06g01644 Lsi-Chr6:26741318 2.92E-68 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi06g01644 CCT,ECH 81 265 CCAAT-HAP5 Transcription Factor Family AT3G48590 90.1 3.0e-89 325.1
Lsi03g00820 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 69.4 2.0e-53 206.1
Lsi06g00137 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.1 1.3e-52 203.4
Lsi06g00137 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.2 8.1e-55 210.7
Lsi03g00820 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 69.9 9.6e-48 187.2
Lsi06g01644 CCT,ECH 81 179 CCAAT-HAP5 Transcription Factor Family AT1G08970 82.8 2.7e-42 169.1
Lsi06g00137 . 23 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 60.5 8.4e-62 233.8
Lsi03g00820 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 1.6e-52 203.0
Lsi06g01644 CCT,ECH 81 239 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.1 6.7e-51 197.6
Lsi06g01644 CCT,ECH 81 238 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.4 1.0e-37 153.7
Lsi06g01644 CCT,ECH 81 265 CCAAT-HAP5 Transcription Factor Family AT5G63470 82.0 2.4e-81 298.9
Lsi03g00820 . 82 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 1.9e-49 193.0
Lsi06g00137 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 62.6 5.5e-49 191.4
Lsi03g00820 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 82.2 2.6e-65 245.4
Lsi06g00137 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.2 3.0e-50 195.3
Lsi06g01644 CCT,ECH 81 204 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 5.2e-50 194.5
Lsi08g00862 . 1 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 63.3 1.1e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000741 2 9 3 3 3 2 3 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 17 4 2 95
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24986 PF00125 Histone 6.00E-18 CL0012 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00820 Lsi_Chr03 FPKM 8.626112 9.238168 7.27903 6.726 5.265778 5.420821 5.993907 9.178508 8.34653 9.573233