Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00820 ATGGATCAATCAGAGCGTTCTCAGCATCAGCAACAATCACAGCAGCCTGCAGGTGGTGTCGGTGCAGGCCAATTACCATATTCTAATCCTTACCAAACAGCTTCGATGGTGGCTTCCGGGACTCCTGCTATTACGATTCCCCCAACTCAGCCACCGTCCAGTTTCTCTAATTCTCCCCACCAGCTTGCCTACCAGCAGGCTCAGCACTTCCACCACCAGCAACAGCAACAACAACAACAACAGCTCCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTTAAGAACCACAGTCTCCCCCTTGCTCGAATCAAGAAAATAATGAAAGCAGATGAAGACGTCCGAATGATTTCAGCTGAAGCACCCGTCATATTCGCAAAGGCATGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAATGATATTGCAGCTGCAATTTCAAGGACCGATGTCTTCGATTTCTTGGTTGATATCATTCCTAGAGATGAACTGAAAGAGGAAGGTCTCGGAATCACAAAAGGTTCCATTCCCGTAGTTGGTTCCCCAGCTGATCTTCCTTATTACTATGTTCCATCGCAGCATCCGGTGGGTGCTACAGGAATGATCATGGGGAAGCAATTAGATCAAGCGAACATGTACGGTGGCACTGCTCAACAGCCCCGACCATCGATGCCTTTCATGCCATGGCCGCATGCTCAACCTCAGCAGCAGCAACAAACTCAGCAGCAAAGTGATGCATAG 801 47.19 MDQSERSQHQQQSQQPAGGVGAGQLPYSNPYQTASMVASGTPAITIPPTQPPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKGSIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGGTAQQPRPSMPFMPWPHAQPQQQQQTQQQSDA 266
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 12431968 12432768 - Lsi03G008200.1 Lsi03g00820 658570
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00820 266 Gene3D Histone, subunit A 64 181 IPR009072 GO:0046982
Lsi03g00820 266 MobiDBLite consensus disorder prediction 1 19 - -
Lsi03g00820 266 MobiDBLite consensus disorder prediction 233 266 - -
Lsi03g00820 266 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 9 260 - -
Lsi03g00820 266 MobiDBLite consensus disorder prediction 55 76 - -
Lsi03g00820 266 MobiDBLite consensus disorder prediction 26 44 - -
Lsi03g00820 266 MobiDBLite consensus disorder prediction 250 266 - -
Lsi03g00820 266 Pfam Core histone H2A/H2B/H3/H4 56 166 IPR007125 GO:0003677
Lsi03g00820 266 MobiDBLite consensus disorder prediction 1 76 - -
Lsi03g00820 266 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 9 260 - -
Lsi03g00820 266 SUPERFAMILY Histone-fold 59 175 IPR009072 GO:0046982
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00820 Lsi-Chr3:12431968 Lsi06g00137 Lsi-Chr6:1329161 8.67E-86 dispersed
Lsi03g00820 Lsi-Chr3:12431968 Lsi06g01644 Lsi-Chr6:26741318 2.92E-68 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24986 PF00125 Histone 6.00E-18 CL0012 Lsi TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00820 K08066 - csv:101213813 412.149