Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi03g00820 | ATGGATCAATCAGAGCGTTCTCAGCATCAGCAACAATCACAGCAGCCTGCAGGTGGTGTCGGTGCAGGCCAATTACCATATTCTAATCCTTACCAAACAGCTTCGATGGTGGCTTCCGGGACTCCTGCTATTACGATTCCCCCAACTCAGCCACCGTCCAGTTTCTCTAATTCTCCCCACCAGCTTGCCTACCAGCAGGCTCAGCACTTCCACCACCAGCAACAGCAACAACAACAACAACAGCTCCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTTAAGAACCACAGTCTCCCCCTTGCTCGAATCAAGAAAATAATGAAAGCAGATGAAGACGTCCGAATGATTTCAGCTGAAGCACCCGTCATATTCGCAAAGGCATGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAATGATATTGCAGCTGCAATTTCAAGGACCGATGTCTTCGATTTCTTGGTTGATATCATTCCTAGAGATGAACTGAAAGAGGAAGGTCTCGGAATCACAAAAGGTTCCATTCCCGTAGTTGGTTCCCCAGCTGATCTTCCTTATTACTATGTTCCATCGCAGCATCCGGTGGGTGCTACAGGAATGATCATGGGGAAGCAATTAGATCAAGCGAACATGTACGGTGGCACTGCTCAACAGCCCCGACCATCGATGCCTTTCATGCCATGGCCGCATGCTCAACCTCAGCAGCAGCAACAAACTCAGCAGCAAAGTGATGCATAG | 801 | 47.19 | MDQSERSQHQQQSQQPAGGVGAGQLPYSNPYQTASMVASGTPAITIPPTQPPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKGSIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGGTAQQPRPSMPFMPWPHAQPQQQQQTQQQSDA | 266 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 12431968 | 12432768 | - | Lsi03G008200.1 | Lsi03g00820 | 658570 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi03g00820 | 266 | Gene3D | Histone, subunit A | 64 | 181 | IPR009072 | GO:0046982 | |
| Lsi03g00820 | 266 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
| Lsi03g00820 | 266 | MobiDBLite | consensus disorder prediction | 233 | 266 | - | - | |
| Lsi03g00820 | 266 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 9 | 260 | - | - | |
| Lsi03g00820 | 266 | MobiDBLite | consensus disorder prediction | 55 | 76 | - | - | |
| Lsi03g00820 | 266 | MobiDBLite | consensus disorder prediction | 26 | 44 | - | - | |
| Lsi03g00820 | 266 | MobiDBLite | consensus disorder prediction | 250 | 266 | - | - | |
| Lsi03g00820 | 266 | Pfam | Core histone H2A/H2B/H3/H4 | 56 | 166 | IPR007125 | GO:0003677 | |
| Lsi03g00820 | 266 | MobiDBLite | consensus disorder prediction | 1 | 76 | - | - | |
| Lsi03g00820 | 266 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 | 9 | 260 | - | - | |
| Lsi03g00820 | 266 | SUPERFAMILY | Histone-fold | 59 | 175 | IPR009072 | GO:0046982 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi03g00820 | Lsi-Chr3:12431968 | Lsi06g00137 | Lsi-Chr6:1329161 | 8.67E-86 | dispersed | |
| Lsi03g00820 | Lsi-Chr3:12431968 | Lsi06g01644 | Lsi-Chr6:26741318 | 2.92E-68 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 24986 | PF00125 | Histone | 6.00E-18 | CL0012 | Lsi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi03g00820 | K08066 | - | csv:101213813 | 412.149 |