Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00825 ATGGACAACATCACCGCCCAATTAAAGAGGGGAATCTCCCGCCAATTCTCCACCGGCTCCTTACGCCGTACCCTAAGTCGTCAATTCTCCCGCCAATCCTCTCTTGACCCGAGAAGGAACAATTTGAGATTCAGCTTCGGCAGACAATCTTCTTTGGACCCTATTCGCCGCTGTCCTGATGATGATAATGACCTTTCTGTACCCGAGAATTTGGATTCCACCATGCAGCTTCTCTTTATGGCTTGCCGTGGCGATTTTAGAGGCGTTGAGGATTTGCTTAATGATGGTACCGATGTTAATAGTATTGATTTGGATGGCCGTACTGCTTTGCATATTGCTGCTTGTGAAGGCCATGCTGAGGTTGTTAAGCTTTTGCTTAGTCGTAAGGCTAATATTGACGCTCGTGATCGTTGGGGGAGTACGGCAGCTGCAGATGCTAAATATTATGGGAATACAGAAATTTACAACATTCTGAAGGCACGTGGAGCAAAAGTTCCGAAATTTAGGAAGACACCAATGACTGTTGCGAATCCTAGGGAAGTTCCTGAGTATGAGCTTAATCCATTGGAGCTTCAGATTCGAAGGAGTGATGGTGCCAGAAATATTTTGCTGGATAATGGAGGACAACTCAAAGTTGCTGGATTTGGCTTGATAAGATTGTCAAAAATGTCACCTGACAAAGCAAAACTAGCTCATCCAGTGGTTATTGACTACTCAAACTCATACTTAGCACCCGAGATTTACAACGATGAAATATTTGATAGAAGTGTCGATGCATTTTCATTTGGTCTCATTTTATATGAGATGGTAGAGGGCATTCAGCCATTCCATCCCAAGCCTCCAGAAGAGGTTGCCAAAGCTATTTGTGCAGAAGGAAAGAGACCTCCATTTAAGATCAAATCGAAAAGTTATCCACCTGATCTAAAAGAGTAA 933 43.52 MDNITAQLKRGISRQFSTGSLRRTLSRQFSRQSSLDPRRNNLRFSFGRQSSLDPIRRCPDDDNDLSVPENLDSTMQLLFMACRGDFRGVEDLLNDGTDVNSIDLDGRTALHIAACEGHAEVVKLLLSRKANIDARDRWGSTAAADAKYYGNTEIYNILKARGAKVPKFRKTPMTVANPREVPEYELNPLELQIRRSDGARNILLDNGGQLKVAGFGLIRLSKMSPDKAKLAHPVVIDYSNSYLAPEIYNDEIFDRSVDAFSFGLILYEMVEGIQPFHPKPPEEVAKAICAEGKRPPFKIKSKSYPPDLKE 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12720025 12725123 + Lsi03G008250.1 Lsi03g00825 658575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00825 310 ProSiteProfiles Ankyrin repeat profile. 105 137 IPR002110 GO:0005515
Lsi03g00825 310 SUPERFAMILY Ankyrin repeat 72 176 IPR036770 -
Lsi03g00825 310 Pfam Ankyrin repeats (3 copies) 79 165 IPR002110 GO:0005515
Lsi03g00825 310 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 199 310 - -
Lsi03g00825 310 Gene3D - 47 184 IPR036770 -
Lsi03g00825 310 ProSiteProfiles Ankyrin repeat region circular profile. 105 137 - -
Lsi03g00825 310 ProSiteProfiles Protein kinase domain profile. 10 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g00825 310 SUPERFAMILY Protein kinase-like (PK-like) 199 298 IPR011009 -
Lsi03g00825 310 SMART ANK_2a 105 134 IPR002110 GO:0005515
Lsi03g00825 310 SMART ANK_2a 73 101 IPR002110 GO:0005515
Lsi03g00825 310 SMART ANK_2a 138 167 IPR002110 GO:0005515
Lsi03g00825 310 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 33 198 - -
Lsi03g00825 310 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 199 310 - -
Lsi03g00825 310 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 33 198 - -
Lsi03g00825 310 Gene3D Transferase(Phosphotransferase) domain 1 198 310 - -
Lsi03g00825 310 PIRSF ILK 193 310 - -
Lsi03g00825 310 PIRSF ILK 8 199 - -
Lsi03g00825 310 Pfam Protein tyrosine and serine/threonine kinase 199 296 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00825 Lsi-Chr3:12720025 Lsi04g00391 Lsi-Chr4:3856559 7.69E-09 dispersed
Lsi03g00825 Lsi-Chr3:12720025 Lsi10g01548 Lsi-Chr10:19887308 4.78E-13 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83479 PF07714 PK_Tyr_Ser-Thr 2.80E-13 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00825 - - csv:101213574 387.497