Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00875 ATGGCTTCCTTCCATGCAGAAGCTTCTGAGCCTGGCAGTGTTGATTATACTCAACGAGCTCAGTGGCTCCGAGCTGCAATTCTCGGGGCCAACGATGGGCTCGTCTCCGTTGCATCGTTGATGATGGGTGTCGGGGCCGTGAAGCCTGATGCCAAAGCCATGCTTATTGCTGGATTTGCAGGGCTGGTCGCCGGAGCTTGTAGTATGGCCATCGGAGAGTTTGTCTCGGTTTACACCCAATATGATATAGAGAAAGCTCAGCTGAAGAGAGATGGGAAAGAAAAGAATAATAGCATACAACCAAACCACCCGGCCGAGGAGGAAGAGAAGCTGCCAAATCCACTACAGGCTGCGCTCGCATCGGCGATAGCGTTTTCGGTTGGAGCAGTCATTCCTTTACTGGCAGCAGTTTTTATCCGAGACCATAAGGTGAGGCTCGGTGTGGTTGCAGCGGTGGCAAGCGTGACACTGGTGGTTTTCGGGGTAGTTGGAGCCATCTTGGGGAGGACTCCGGTGGGGAAATCCGCGGCAAGAGTGCTCGTCGGAGGGTGGATGGCTATGGCCATTACTTTTGGCCTTACAAAGCTGCTTGGGTCTAAGGGACTGTGA 609 53.69 MASFHAEASEPGSVDYTQRAQWLRAAILGANDGLVSVASLMMGVGAVKPDAKAMLIAGFAGLVAGACSMAIGEFVSVYTQYDIEKAQLKRDGKEKNNSIQPNHPAEEEEKLPNPLQAALASAIAFSVGAVIPLLAAVFIRDHKVRLGVVAAVASVTLVVFGVVGAILGRTPVGKSAARVLVGGWMAMAITFGLTKLLGSKGL 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15063882 15065828 + Lsi03G008750.1 Lsi03g00875 658625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00875 202 MobiDBLite consensus disorder prediction 92 111 - -
Lsi03g00875 202 Pfam VIT family 23 99 IPR008217 GO:0005384|GO:0030026
Lsi03g00875 202 Pfam VIT family 107 194 IPR008217 GO:0005384|GO:0030026
Lsi03g00875 202 MobiDBLite consensus disorder prediction 92 110 - -
Lsi03g00875 202 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 10 199 IPR008217 GO:0005384|GO:0030026
Lsi03g00875 202 PANTHER VACUOLAR IRON TRANSPORTER HOMOLOG 2.1 10 199 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00875 Lsi-Chr3:15063882 Lsi08g00551 Lsi-Chr8:13677376 5.17E-76 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00875 K22736 - csv:101214875 355.525