Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00937 ATGATGAAGCTGCAAACATATGCGGGGATTAGTTTCATTGCAACCATAGTGGTTATCTATCATGCCTTCAACAGTAGAGGGCAGTTCTACCCAGCATTGGTCTATTTATCGACTTCCAAGATAAATCTAGTGCTTCTTCTCAATATGGGTTTAGTCATCATGTGCATTTTGTGGCAGCTAACAAAAAAAATATTTCTGGGTTCTCTTAGAGAAGCAGAAGTTGAGAGGCTCAACGAGCAATCATGGAAGGAGTTGATGGAAATCCTCTTTGCCATCACTATCTTCCGGCAAGATTTTTCTGTTGCATTCCTGGGTATGGTTACAGCTCTGTTGTTGATCAAAGCTCTGCATTGGCTGGCTCAGAAGAGGGTTGAATACATGGAAACCACTCCATCGGTGCCGTTGTTGTCCCATATCCGGATAGTTTCTTTCTTAGGCTTCCTCTTTGTTCTAGATAGTCTTTTTTTTTATAATTCGATAGAATCTCTGATACGGACAAGGAAGGCCTCGGTTTCCCTCTTCTTTTCATTTGAGTATATGATTCTTGCGACAACAGCTGTGTCAACGTTTGTGAAATATATTTTCTATGTCAGTGATGTGCTCATGGAGGGACAATGGGAAAGGAAGCCCGTCTATACATTTTACTTGGAACTTATCCGGGACTTACTTCACTTGTCGATGTACTTGTGTTTCTTTCTTGTGATTTTCATGACTTATGGTGTGCCTTTGCACTTGATCCGAGAGCTCTATGAGATCTTTAGGAATTTTAGGATTCGCATTGCAGATTACATCCGTTATAGAAAGATTACTTCAAATATGAATGATCGTTTTCCAGATGCAACGCCAGAAGAACTCAATTCAAGTGATGCAACATGCATTATTTGTCGTGAAGAGATGACAGTTGCAAAGAAACTAGTATGTGGACATCTTTTCCACGTCCATTGCCTCCGATCCTGGTTGGAGCGACAACATACTTGCCCTACTTGCAGAGCCCTTGTTGTACCACCCGAAGGTTCAAGCGCAGCAGGCGGTCATCATGGAGTGCAGTCTGATGCTAACCAACAAGGTAATTGCACTAATAACAATTCAATTCAATTTACCATTACCACCTGGCTAAAGGAGACCGTCCTTAAAGTTGTCTTTTGTTTTATCTCTTTTTGTGTCTTAGCAATTCAATCTCTTCTAAAGGAAGTAGTTTGGATTCCCTCCAGTGTATCTGCTTTCTTTAATAGAGGAACAGGAACCACAGGTCCATCTGCACAAGGTACGAATGGTACGGGTGCTGCTAATGATAATTTGAGCCATCATCAGGCTAGAGTCCGAGCTGCAGCAGCAGCTGCTTCAATATATGAGAAATCATATGTTTATCCTTTTGCGAGCACATTAGTATGGTCTCCTGGATACGCAGTAGTTCCTCAGGTTGAAAGACCTTTGCCTGACTCCAACAATACAGAAACGAATGGAGAACAAGCTCCCAATGGACATCCACAATACTTTTCATTTCCTGGTGGCCCTTCAAACCTGTCCTTCACTCAATTTCCACAAAATCTCTTTGTTCCTTTTCAGCCACGAGAGGGCACAGGAAACAATACGGATGGTTTGGGCAGTAGTCTAAATGTATCAGACTCACAGCTTGAAGCTCATGAAAGATTTCTTCAACAACAGATTGAGGTAGATTATTTAATTGCAGCATCAATATTACCTAGTGAACTGTCTTGTTTGGTCGGTGCAGGTTTTGTTTGGGCTCTTGTTGCTGGGCCCTTGTATTATCTTTAG 1776 41.78 MMKLQTYAGISFIATIVVIYHAFNSRGQFYPALVYLSTSKINLVLLLNMGLVIMCILWQLTKKIFLGSLREAEVERLNEQSWKELMEILFAITIFRQDFSVAFLGMVTALLLIKALHWLAQKRVEYMETTPSVPLLSHIRIVSFLGFLFVLDSLFFYNSIESLIRTRKASVSLFFSFEYMILATTAVSTFVKYIFYVSDVLMEGQWERKPVYTFYLELIRDLLHLSMYLCFFLVIFMTYGVPLHLIRELYEIFRNFRIRIADYIRYRKITSNMNDRFPDATPEELNSSDATCIICREEMTVAKKLVCGHLFHVHCLRSWLERQHTCPTCRALVVPPEGSSAAGGHHGVQSDANQQGNCTNNNSIQFTITTWLKETVLKVVFCFISFCVLAIQSLLKEVVWIPSSVSAFFNRGTGTTGPSAQGTNGTGAANDNLSHHQARVRAAAAAASIYEKSYVYPFASTLVWSPGYAVVPQVERPLPDSNNTETNGEQAPNGHPQYFSFPGGPSNLSFTQFPQNLFVPFQPREGTGNNTDGLGSSLNVSDSQLEAHERFLQQQIEVDYLIAASILPSELSCLVGAGFVWALVAGPLYYL 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17961343 17967783 + Lsi03G009370.1 Lsi03g00937 658687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00937 591 Pfam Ring finger domain 291 330 IPR001841 -
Lsi03g00937 591 PANTHER - 1 463 - -
Lsi03g00937 591 CDD RING-H2_synoviolin 289 330 - -
Lsi03g00937 591 SUPERFAMILY RING/U-box 272 337 - -
Lsi03g00937 591 SMART ring_2 292 329 IPR001841 -
Lsi03g00937 591 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Lsi03g00937 591 PANTHER RING ZINC FINGER PROTEIN 1 463 - -
Lsi03g00937 591 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 336 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00937 Lsi-Chr3:17961343 Lsi05g00881 Lsi-Chr5:15215200 1.90E-22 dispersed
Lsi03g00937 Lsi-Chr3:17961343 Lsi04g00413 Lsi-Chr4:4011664 2.38E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00937 K10601 - csv:101215351 910.212