Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00939 ATGTCGGTGATGTTGGGTTCTTCCTCTTCTTCTTCTCTGTGGATCATTTTCGTGCTGGGTTTTGTTTCCTTGCTCTCTGCTAATCCTGAAGGCGATGCTTTGAATGCATTGAAGTCAAATTTACAAGATCCCAACGGTGTACTACAGAGTTGGGATCCTACACTTGTTAATCCTTGCACATGGTTCCATGTCACCTGTGACAGTGAGAATAGTGTCACTCGAGTTGATCTTGGAAATGCCAATCTATCTGGCACGTTGGTTCCACAACTTGGTGATCTTCAAAATTTGCAATATCTGGAGCTTTACAGTAACAATATTAGTGGTGAAATTCCGCCGGAGATTGGGCTTTTGACAAACTTGGTGAGCTTGGATCTTTACTTGAACAATTTAACTGGTCCCATACCATCCACACTTGGCGAGCTTGATAAACTGCGTTTCCTGCGTCTTAACAACAACAGCTTATCGGGAACCATCCCAATGTCATTAACTAAAGTTAAATCCTTGCAAGTCCTGGATCTTTCATACAACAAGCTAACTGGAGATATCCCGGTCAATGGTTCTTTTTCTCTTTTTACCCCTATCAGTTTTGCTCATAATTTTCTTAATGAATCTGCTGCACATACTCCACCACCTCCTCTACCTTCTTCACCAAGCCCCGTATCAGCCCAGCTAGCTGTCCTGCTGGCAGCAACTCAACTACTATACAACATTAAACCTCTTTTTGAAAATTACTTTCTTGTTTTTGTTGCAACTTCTAAGTTATCAACAAAAAGCAATAGCGCCACTGGAGCTATTGCTGGTGGAGTTGCTGCTGCTGCTGCTTTACTGTTTGCTGCTCCTGCTGTCGCGGTTGCTCTGTGGCGTCGGAAGAAGCCACAAGATCATTTCTTTGATGTACCTGCCGAAGAGGATCCGGAAGTTCATCTTGGTCAGCTCAAGAGGTTTTCTCTTCGTGAACTACAAGTTGCAACAGATCATTTTAGCAACAAACATATTCTAGGTAGAGGTGGTTTTGGCAAGGTCTATAAGGGACGGCTGGCTGATGGATCTCTAGTGGCAGTTAAAAGACTCAAAGAGGAGCGTTCACAGGGTGGGGAGCTGCAATTCCAAACAGAAGTAGAGATGATCAGCATGGCTGTGCATCGTAATCTGCTTCGCCTGCGTGGCTTTTGTATGACACCAACTGAGCGGTTGTTGGTCTATCCATTTATGGTTAATGGAAGTGTAGCATCATGTTTGAGAGAACGTCAAGAAGCACAACCTCCACTTAATTGGTTGAATCGAAAACGCATTGCTTTGGGAGCGGCAAGGGGACTTGCTTATCTACATGATCATTGTGATCCTAAGATTATCCATCGTGATGTGAAAGCTGCAAACATTTTACTTGACGAGGAGTATGAAGCTGTTGTTGGTGATTTTGGTTTGGCTAAACTCATGGACTACAAAGATACTCATGTTACAACTGCAGTACGAGGAACTATTGGGCATATAGCTCCTGAATACCTTTCAACTGGAAAGTCTTCTGAAAAGACTGATGTTTTTGGGTATGGGGTAATGCTTCTTGAACTCATTACTGGACAGAGGGCCTTTGATCTTGCCCGGCTTGCAAATGATGATGATGTCATGCTTCTTGATTGGGTGAAAGGACTTCTAAAAGACAAGAGATTGAAAACACTAGTTGATCCCGATCTTGCGGGAAAATATCCCGACGATGAAGTCGAGCAGCTTATACAAGTTGCCTTATTGTGCACACAAGGCACTCCTACAGAACGGCCTAAGATGTCAGAGGTTGTACGGATGCTTGAGGGTGATGGTTTAGCTGAAAGATGGGAAGAATGGCAGAAAGAGGAGCGGTTTCATCAAGACATAAGCCGCAATCTCCACCCAAGTACGACTTGGATTCTCGACTCTACTGCTGAAATTCCTCCCGATGAATTGTCCGGTCCAAGATGA 1953 43.93 MSVMLGSSSSSSLWIIFVLGFVSLLSANPEGDALNALKSNLQDPNGVLQSWDPTLVNPCTWFHVTCDSENSVTRVDLGNANLSGTLVPQLGDLQNLQYLELYSNNISGEIPPEIGLLTNLVSLDLYLNNLTGPIPSTLGELDKLRFLRLNNNSLSGTIPMSLTKVKSLQVLDLSYNKLTGDIPVNGSFSLFTPISFAHNFLNESAAHTPPPPLPSSPSPVSAQLAVLLAATQLLYNIKPLFENYFLVFVATSKLSTKSNSATGAIAGGVAAAAALLFAAPAVAVALWRRKKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDHFSNKHILGRGGFGKVYKGRLADGSLVAVKRLKEERSQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRERQEAQPPLNWLNRKRIALGAARGLAYLHDHCDPKIIHRDVKAANILLDEEYEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKRLKTLVDPDLAGKYPDDEVEQLIQVALLCTQGTPTERPKMSEVVRMLEGDGLAERWEEWQKEERFHQDISRNLHPSTTWILDSTAEIPPDELSGPR 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17977854 17987980 + Lsi03G009390.1 Lsi03g00939 658689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00939 650 Gene3D Ribonuclease Inhibitor 27 207 IPR032675 -
Lsi03g00939 650 SMART serkin_6 327 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g00939 650 Gene3D Phosphorylase Kinase; domain 1 296 403 - -
Lsi03g00939 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Lsi03g00939 650 SUPERFAMILY L domain-like 29 204 - -
Lsi03g00939 650 ProSiteProfiles Protein kinase domain profile. 327 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g00939 650 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Lsi03g00939 650 PANTHER BNAA08G11770D PROTEIN 9 221 IPR031048 GO:0004675|GO:0005102|GO:0006468
Lsi03g00939 650 PANTHER BNAA08G11770D PROTEIN 255 650 IPR031048 GO:0004675|GO:0005102|GO:0006468
Lsi03g00939 650 ProSiteProfiles Leucine-rich repeat profile. 95 117 IPR001611 GO:0005515
Lsi03g00939 650 SUPERFAMILY Protein kinase-like (PK-like) 306 602 IPR011009 -
Lsi03g00939 650 Gene3D Transferase(Phosphotransferase) domain 1 404 621 - -
Lsi03g00939 650 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 221 - -
Lsi03g00939 650 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 255 650 - -
Lsi03g00939 650 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Lsi03g00939 650 Pfam Protein kinase domain 328 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00787 Lsi-Chr3:11457023 Lsi03g00939 Lsi-Chr3:17977854 5.94E-34 dispersed
Lsi03g00788 Lsi-Chr3:11461901 Lsi03g00939 Lsi-Chr3:17977854 7.91E-22 dispersed
Lsi03g00789 Lsi-Chr3:11467728 Lsi03g00939 Lsi-Chr3:17977854 0 dispersed
Lsi03g00939 Lsi-Chr3:17977854 Lsi07g00190 Lsi-Chr7:2064152 0 dispersed
Lsi09g01758 Lsi-Chr9:26311232 Lsi03g00939 Lsi-Chr3:17977854 3.29E-59 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83480 PF00069 Pkinase 2.10E-44 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00939 K13416 - csv:101216389 1089.33