Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00945 ATGGCCGAGGCTGAATTCGAAAGGGGTGAGACCAATTGCGGCCTTGCTTCCATGGATTCCTCCGAGTCCAGATGGGTTTTTCAGGATGACGACCAATCGGACATCGACGACGACGACGATGACGACGACCACCACGATAATGCAGCGGGCCATCGTATGGATTTGGAATCTGAGGAAGAAGATAATGTTGAGCAGAAATTGATTCGGACTGGCCCACGTATTGATTCTTTCGATGTCGAAGCCCTTGACGTCCCTGGTGCACATAGAAATGAATACGAGGACTTCAGCGTGGGAAAGAAAATTGCTCTTGCTTTTCAGACCCTTGGAGTCGTATTTGGTGATGTTGGGACAAGTCCTCTGTATACCTTCAGTGTCATGTTCAACAAAGTTCCTATTAATGGAGACGAAGATGTTATTGGGGCATTATCGCTAGTTATCTACACCTTAATCTTGATTTCACTAGTCAAGTATGTTCTTGTTGTTCTTCTGGCAAATGATGATGGTGAAGGCGGTACTTTTGCTTTGTACTCTTTGATTTGTAGACATGCCAAGGTCAGTCTACTCCCAAATCAACTGCCTTCGGATACCCGAATATCAAGTTTTAGATTAAAGGTGCCATCAGCTGAATTGGAAAGATCACTAAAAATAAAGGAAAAACTTGAGGCTTCCCTGACCTTGAAGAAGCTTCTTCTGATGCTTGTTCTTGCTGGAACTGCTATGGTAATAGCCGATGGAGTTGTTACACCAGCAATGTCAGTAATGTCGGCTGTTGGTGGACTAAAGATTGCAGTGGATGCAATCAACCAAGATGAGGCTGTGATGATCTCAGTTGCTTGTCTTATAGTTTTGTTCAGTGTTCAGAAGTATGGCACTAGCAAAGTGGGGCTCGCTGTTGGTCCTGCCTTATTTATATGGTTTTGTACACTTGGAGGCATTGGGATTTATAATCTTGTCATATATGATAGCAGTGTATTGAAGGCATTCAATCCTGTTCATATTTATTATTTCTTTAAGAGGAACTCTACCAATGCATGGAGTCTTTCTATCCCGATTTTCATCTACATGATTCCTAGGCCTGAGGACTTTGCGAGGTTTGTTCTGAATCTTGAGAACCTGCTAGGAACAATGTTGGAGTCTCACCAGTTGGCAGAATCAATAGGTTCAGAGGCAATGTTTGCAGATCTTTGCTATTTCTCTGTGCGGTCAATACAGCTTACGTTTGTGTTTCTTGTCTTGCCTTGTCTTTTCCTGGGTTATTTGGGTCAAGCCGCCTACCTTATATCAAACCACAATGGAGCTGAGCACGTATTTTTTAATTCTGTTCCCAAAAGTGCCTTCTGGCCAGTTTTTCTCATTGCCAATGTTGCTGCATTGATTGCTAGTCGGGCAATGACTACGGCTACCTTTTCATGTATAAAACAATCAACAGCACTTGGTTGTTTTCCTCGTCTTAAGATTATTCATACATCTAGGAAATTCATGGGGCAGATCTATATCCCGGTGTTGAATTGGTTTTTGTTGGCTGTTTGCCTGGTGGTCGTCTGCTCCATATCTAGCATGTATGAGATTGGAAATGCATATGGTATTGCTGAGCTGGGAGTTATGATGATGACGACTGTCTTGGTTACCATTGTTATGCTTCTTATATGGCAGATAAACATTATCATCGTGATGGTTTTTGCGATGATCTTTCTTGGGATAGAACTGATATTTTTCTCGTCTGTGTTATGGGGTGTGGGTGATGGAAGTTGGATCATATTGGTATTCGCAGTAATTATGTTTTTCATTATGTATATTTGGAACTACGGAAGCAAGCTCAAATATGAAACTGAAGTCAAGCAAAAGCTGTCAATGGATTTAATGCGGGAACTTGGGTGTAATCTCGGGACAATCAGAGCTCCTGGCATCGGTTTGCTCTATAATGAACTAGTGAAAGGAATACCTGCAATATTTGGCCATTTTCTGACTACTCTTCCTGCAGTTCATTCAATGATCATATTTGTCTGCATCAAGTACGTACCAGTTCCTGTTGTGCCGCAGAGTGAGAGATTTCTTTTCCGCCGAGTCTGTCCAAAGAGCTATCACATCTTTCGTTGCATTGCCAGGTATGGTTACAAGGATGTTCGAAAAGAAAATCATCAGACGTTTGAGCAGCTCTTAATTGAAAGCCTTGAGAAATTCATCCGTCGAGAAGCACAAGAAAGGTCATTAGAGAGCGATGGAGATGATGATACTGATTCCGACGAGACTCGCTGCTCGCGATTTCTCGTCGGTCCCAATGGAAGTGTCTATTCGCTTGGCATTCCTCTCCTTGGTGAATTCAACGAGACTACTAGACCCATAACTGAAGTCATCAACGTACCAGAAGAGGTGCAGCCAGTGGAATCTCCAGACCCCTCAATCCCAGATGCAGAGCAATCACTCGAGAGAGAGCTTTCTTTTATACGAAAGGCTAAAGAATCAGGAGTGGTTTACCTTCTTGGTCATGGAGACATTAGAGCAAGAAAGGATTCTTGGTTTATTAAGAAGCTAATAATCAATTACTTCTATGCATTTTTAAGAAAGAACAGCAGGAGGGGTATTGCCAACTTGAGTGTTCCCCACACCCACCTGATGCAGGTTGGCATGACATACATGGTTTAG 2643 42.68 MAEAEFERGETNCGLASMDSSESRWVFQDDDQSDIDDDDDDDDHHDNAAGHRMDLESEEEDNVEQKLIRTGPRIDSFDVEALDVPGAHRNEYEDFSVGKKIALAFQTLGVVFGDVGTSPLYTFSVMFNKVPINGDEDVIGALSLVIYTLILISLVKYVLVVLLANDDGEGGTFALYSLICRHAKVSLLPNQLPSDTRISSFRLKVPSAELERSLKIKEKLEASLTLKKLLLMLVLAGTAMVIADGVVTPAMSVMSAVGGLKIAVDAINQDEAVMISVACLIVLFSVQKYGTSKVGLAVGPALFIWFCTLGGIGIYNLVIYDSSVLKAFNPVHIYYFFKRNSTNAWSLSIPIFIYMIPRPEDFARFVLNLENLLGTMLESHQLAESIGSEAMFADLCYFSVRSIQLTFVFLVLPCLFLGYLGQAAYLISNHNGAEHVFFNSVPKSAFWPVFLIANVAALIASRAMTTATFSCIKQSTALGCFPRLKIIHTSRKFMGQIYIPVLNWFLLAVCLVVVCSISSMYEIGNAYGIAELGVMMMTTVLVTIVMLLIWQINIIIVMVFAMIFLGIELIFFSSVLWGVGDGSWIILVFAVIMFFIMYIWNYGSKLKYETEVKQKLSMDLMRELGCNLGTIRAPGIGLLYNELVKGIPAIFGHFLTTLPAVHSMIIFVCIKYVPVPVVPQSERFLFRRVCPKSYHIFRCIARYGYKDVRKENHQTFEQLLIESLEKFIRREAQERSLESDGDDDTDSDETRCSRFLVGPNGSVYSLGIPLLGEFNETTRPITEVINVPEEVQPVESPDPSIPDAEQSLERELSFIRKAKESGVVYLLGHGDIRARKDSWFIKKLIINYFYAFLRKNSRRGIANLSVPHTHLMQVGMTYMV 880
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18039437 18050037 - Lsi03G009450.1 Lsi03g00945 658695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00945 880 Pfam K+ potassium transporter 104 346 IPR003855 GO:0015079|GO:0016020|GO:0071805
Lsi03g00945 880 Pfam K+ potassium transporter 386 707 IPR003855 GO:0015079|GO:0016020|GO:0071805
Lsi03g00945 880 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 384 879 IPR003855 GO:0015079|GO:0016020|GO:0071805
Lsi03g00945 880 PANTHER POTASSIUM TRANSPORTER 7 21 346 - -
Lsi03g00945 880 MobiDBLite consensus disorder prediction 1 62 - -
Lsi03g00945 880 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 21 346 IPR003855 GO:0015079|GO:0016020|GO:0071805
Lsi03g00945 880 MobiDBLite consensus disorder prediction 44 62 - -
Lsi03g00945 880 PANTHER POTASSIUM TRANSPORTER 7 384 879 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00945 Lsi-Chr3:18039437 Lsi11g00079 Lsi-Chr11:846089 0 dispersed
Lsi03g00945 Lsi-Chr3:18039437 Lsi03g01412 Lsi-Chr3:25070978 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00945 - - csv:101214942 1509.2