Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00950 ATGGATAACTTATGCTGCTTCAATTCTGTCTATTCTCAGTTTGTAGGAGGACGTTCGTCATGTAGCTCTGGAAAGGGCAGGGGCAATTTATGCCCTGCCAGGTATGGCTTTAGCCTAGTAAAAGGCAAAGCAAATCATCCCATGGAGGATTATCATGTTGCTAAATTTATTACCGTGCACGGCCGTGAGCTAGGCCTTTTTGCTATATATGATGGACATTTAGGAGACAGTGTACCCGCCTATCTACAGAAGCATCTATTTCCTAATATACTGAAGGATGAGGAATTCTGGTCGAATCCCGGTAGCTCTATCTTTAAGGCTTACGAGAAGACAGATCAAGCAATACTCTCACACAGTCCTGACTTAGGAAGAGGTGGATCCACTGCCGTCACTGCAATTTTGATAAATGGTCAGAAATTATGGGTGGCTAATGTTGGAGATTCACGGGCAGTCCTTTCGAAAAAAGGGCAGGAAGTGCAAATGTCAATTGATCACGAGCCGAACACTGAGCGAGGAAGTATTGAGGACAGAGGTGGCTTTGTCTCTAACATGCCAGGTCTGGTTCAAGCCTTTTTTGGGTCATCTTCTCAGAAAACTAAATATCTAATGAATTTTCTAACAGCAAATGTTGTCAAATATGGTGGTGGTCAAGACACTCACAAGGAAACCATTAATGGGCATTTGATCTTTGCTGCATATAATATTGAGAAGAAGAAACAGGATATGGGACTGGCTTCAAATGGAGATGTTGCAAGAGTGAATGGGCAGCTTGCAGTTTCTCGAGCATTTGGCGACAAGAACCTCAAGACACACTTGCGATCTGATCCTGATATAACGAATGCCGATGTTGACTCTGACACTGAGCTTCTTATCTTAGCAAGTGATGGTCTATGGAAGGTGATTGCTTCCCATCAAACTTGCAACAAGTATTCCATTTTGAATGTCATGACAAATCAAGAAGCCGTGGATATAGCAAGAAGAACCAAGGATCCCCAGAGAGCAGCAAAGCAATTAGCAGCAGAAGCACTGAAAAGGGAAAGCAAAGACGACATCTCAATCATCGTAGTTCGTTTCAAAGGGTAA 1083 43.03 MDNLCCFNSVYSQFVGGRSSCSSGKGRGNLCPARYGFSLVKGKANHPMEDYHVAKFITVHGRELGLFAIYDGHLGDSVPAYLQKHLFPNILKDEEFWSNPGSSIFKAYEKTDQAILSHSPDLGRGGSTAVTAILINGQKLWVANVGDSRAVLSKKGQEVQMSIDHEPNTERGSIEDRGGFVSNMPGLVQAFFGSSSQKTKYLMNFLTANVVKYGGGQDTHKETINGHLIFAAYNIEKKKQDMGLASNGDVARVNGQLAVSRAFGDKNLKTHLRSDPDITNADVDSDTELLILASDGLWKVIASHQTCNKYSILNVMTNQEAVDIARRTKDPQRAAKQLAAEALKRESKDDISIIVVRFKG 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18195579 18200739 + Lsi03G009500.1 Lsi03g00950 658700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00950 360 SMART PP2C_4 30 356 IPR001932 -
Lsi03g00950 360 PANTHER PHOSPHATASE 2C FAMILY PROTEIN 246 359 - -
Lsi03g00950 360 ProSiteProfiles PPM-type phosphatase domain profile. 34 358 IPR001932 -
Lsi03g00950 360 SUPERFAMILY PP2C-like 30 359 IPR036457 -
Lsi03g00950 360 Gene3D - 19 360 IPR036457 -
Lsi03g00950 360 PANTHER PROTEIN PHOSPHATASE 2C 1 190 IPR015655 GO:0004722|GO:0006470
Lsi03g00950 360 CDD PP2Cc 34 358 IPR001932 -
Lsi03g00950 360 PANTHER PROTEIN PHOSPHATASE 2C 246 359 IPR015655 GO:0004722|GO:0006470
Lsi03g00950 360 Pfam Protein phosphatase 2C 43 183 IPR001932 -
Lsi03g00950 360 Pfam Protein phosphatase 2C 241 307 IPR001932 -
Lsi03g00950 360 PANTHER PHOSPHATASE 2C FAMILY PROTEIN 1 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00950 Lsi-Chr3:18195579 Lsi04g02233 Lsi-Chr4:29379074 6.57E-28 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00950 K17506 - csv:101214223 439.499