Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00956 ATGGAAAATTTTGCCCTCCAATCTGTCTCCACTACCACTTTTTTTTCCCCTCATTCTCCCATTTCTCGAATTTCTCTCCTCCATCGCTCTAAACCCATTTCCCATTCCCTCTCCTTTTCCACTTCCCTTCATTTTTCTCGCTCGATTTCGCTATTTCAATCGACCCCACCAATCTCCCAATCCCCCCTTTTCACTTCTCGATCTTCCCTTTTCAATCCCCTCTTCAATCCCAAATTGCGTCGAGCCTCTCCAATGCGAACCAGTTCTTCTCAATCGCCGGATAATCAGTCATTGCCACCGACCCGACCGACCCCACCTCCCCGACAAGGTGCTAAGCCAATCCCTTTTCTAGTTTCCATCGCTATTGGCCTCATTGTTCGATTTGCCATCCCGAAACCGGTCGAGGTTTCAGCTCAAGCCTGGCAGTTGCTCTCGATTTTCTTATCTACCATTGCTGGACTTGTTTTGAGTCCCTTGCCGGTTGGTGCTTGGGCGTTTCTTGGCTTGACTGTCACTGTGGTTACTAAGACTTTGACGTTTGCTGCTGCTTTTAATGCCTTCACGAGTGAGGTCATTTGGTTGATTGTCATTTCCTTTTTTTTCGCTCGTGGGTTTGTGAAAACTGGGTTGGGGGATCGAATTGCGACGTATTTTGTTAAATGGTTGGGGAAGAGTACGCTTGGTTTGTCTTATGGTTTGACGATTAGTGAGGCTTTGATTGCCCCTGCTATGCCGAGCACTACGGCCAGAGCTGGGGGTGTGTTTTTGCCTATTATTAAGTCTTTGTCGCTTGCTGCTGATAGTAAACCGAACCACCCATCGTCTAAAAAGATCGGTGCTTACCTTGTTCAATCTCAGTTTCAGTGTGCTGGTAACTCTAGTGCCCTTTTCCTAACTGCTGCTGCTCAAAATTTGTTGTGCCTTAAATTGGCTGAAGAACTTGGTGTGCAAATATCTAGCCCCTGGCTTACTTGGGCCAAGTTTGCTTGTGTGCCAGCAATCATTGGTCTCTTAGTAACTCCGGCGATCTTATACAAGTTGTTTCCTCCAGAAACCAAGGACACACCTGAGGCCCCAGCCATGGCTACAAGAAAATTGGAGGCTATGGGTCCTGTCACCAAAAACGAATGGGTCATGGTCGGTACCATGCTTATTGCAGTCTCTTTATGGATTGCTGGTCCCCTGCTCCTAGTCTACTTCTTGAAACCATTTTCTCATGAGATTCCTGATCTTACTAGAGAGGCCCTTAAAATACCAAGTGTTGTAGCTGCAATGATTGGTTTATCAATACTCCTTACACTGGGAGTCCTAAACTGGGATGACTGCTTAGCCGAAAAGTCAGCCTGGGATACATTAGCTTGGTTCGCTGTCCTGGTGGGCATGGCTGGCCAATTGACAAGTCTTGGTCTCGTGGGCTGGATGTCGAATTGTGTGGCCAGTTTGCTTAAGTCTATGTCTCTCAGCTGGCCTGCAGCATTTGCTATTCTTCAGGCATCATACTTCTTCGTTCACTACCTCTTCGCTAGCCAAACCGGTCACGTTGGCGCTTTGTACTCGGCATTCCTTGCAATGCACTTGGCTGCCAAGGTACCAGGTGTGTTGGCAGCTCTGGCCTTAGCTTACAACACAAATCTCTTCGGCGCTCTGACTCATTACAGCAGTGGCCAAGCTGCTGTATACTATGGAGCGGGTTACGTCGAGCTACCAGATGTATTCAAAATCGGTTTCGTGATGGCCCTCATAAATGGTATTATCTGGACTGTGGTTGGAGAGAGAACGAAGAAGAAGAAGAAGAAAGGGTTTGGCCATTCGAATATCGCCACTTTGATTCAGTCTAATCCACCCCAACACTTCGCCGAATTCCGATTTCTGGGGCTTTGGATTCTTAAGAGACGTAAGCCATGGATTTAG 1911 47.41 MENFALQSVSTTTFFSPHSPISRISLLHRSKPISHSLSFSTSLHFSRSISLFQSTPPISQSPLFTSRSSLFNPLFNPKLRRASPMRTSSSQSPDNQSLPPTRPTPPPRQGAKPIPFLVSIAIGLIVRFAIPKPVEVSAQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTVTVVTKTLTFAAAFNAFTSEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTISEALIAPAMPSTTARAGGVFLPIIKSLSLAADSKPNHPSSKKIGAYLVQSQFQCAGNSSALFLTAAAQNLLCLKLAEELGVQISSPWLTWAKFACVPAIIGLLVTPAILYKLFPPETKDTPEAPAMATRKLEAMGPVTKNEWVMVGTMLIAVSLWIAGPLLLVYFLKPFSHEIPDLTREALKIPSVVAAMIGLSILLTLGVLNWDDCLAEKSAWDTLAWFAVLVGMAGQLTSLGLVGWMSNCVASLLKSMSLSWPAAFAILQASYFFVHYLFASQTGHVGALYSAFLAMHLAAKVPGVLAALALAYNTNLFGALTHYSSGQAAVYYGAGYVELPDVFKIGFVMALINGIIWTVVGERTKKKKKKGFGHSNIATLIQSNPPQHFAEFRFLGLWILKRRKPWI 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18309089 18321419 - Lsi03G009560.1 Lsi03g00956 658706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00956 636 PANTHER DICARBOXYLIC ACID TRANSPORTER2 414 591 - -
Lsi03g00956 636 TIGRFAM dass: transporter, divalent anion:Na+ symporter (DASS) family 132 590 IPR001898 GO:0016020|GO:0022857|GO:0055085
Lsi03g00956 636 PANTHER DICARBOXYLATE TRANSPORTER 2.1, CHLOROPLASTIC 45 395 IPR030676 -
Lsi03g00956 636 MobiDBLite consensus disorder prediction 82 97 - -
Lsi03g00956 636 Pfam Sodium:sulfate symporter transmembrane region 116 590 IPR001898 GO:0016020|GO:0022857|GO:0055085
Lsi03g00956 636 MobiDBLite consensus disorder prediction 81 109 - -
Lsi03g00956 636 PANTHER DICARBOXYLIC ACID TRANSPORTER2 45 395 - -
Lsi03g00956 636 PANTHER DICARBOXYLATE TRANSPORTER 2.1, CHLOROPLASTIC 414 591 IPR030676 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00956 - - K03319 csv:101213018 999.579
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00956 Lsi-Chr3:18309089 Lsi10g01061 Lsi-Chr10:14855771 3.00E-144 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi01g00289 . 1 357 Antiporters AT5G46110 69.4 2.4e-142 502.3
Lsi04g00366 . 43 367 Antiporters AT5G46110 59.4 8.1e-114 407.5
Lsi05g00617 . 1 395 Antiporters AT5G54800 73.5 7.0e-160 560.5
Lsi04g01225 CCT,ECH 39 433 Antiporters AT5G54800 73.5 8.5e-158 553.5
Lsi01g00413 . 46 407 Antiporters AT5G54800 74.7 1.5e-141 499.6
Lsi05g00616 CCT,ECH 7 152 Antiporters AT5G54800 89.7 1.8e-70 263.5
Lsi02g00376 . 109 526 Antiporters AT3G01550 50.1 7.2e-101 364.4
Lsi02g01577 . 46 332 Antiporters AT3G01550 63.8 4.8e-97 351.7
Lsi02g00376 . 57 528 Antiporters AT5G33320 62.7 8.2e-143 503.8
Lsi02g01577 . 1 332 Antiporters AT5G33320 50.8 1.3e-84 310.5
Lsi04g01225 CCT,ECH 62 434 Antiporters AT1G61800 75.1 6.2e-159 557.4
Lsi05g00617 . 43 396 Antiporters AT1G61800 78.5 2.0e-157 552.4
Lsi01g00413 . 1 406 Antiporters AT1G61800 71.2 1.1e-152 536.6
Lsi05g00616 CCT,ECH 6 152 Antiporters AT1G61800 87.1 3.2e-70 262.7
Lsi04g01225 CCT,ECH 119 432 Antiporters AT5G17630 54.3 3.7e-90 328.9
Lsi05g00617 . 89 394 Antiporters AT5G17630 54.0 9.1e-89 324.3
Lsi05g00616 CCT,ECH 7 152 Antiporters AT5G17630 57.0 4.9e-42 169.1
Lsi10g00028 . 72 449 Antiporters AT3G13320 76.8 3.7e-157 551.6
Lsi07g00632 . 58 377 Antiporters AT3G13320 70.3 7.5e-126 447.6
Lsi07g01450 . 24 396 Antiporters AT3G13320 59.8 6.6e-106 381.3
Lsi01g01544 . 3 368 Antiporters AT2G38170 59.9 1.6e-126 449.9
Lsi03g02209 . 92 371 Antiporters AT2G38170 64.4 1.1e-95 347.4
Lsi07g01450 . 24 260 Antiporters AT2G38170 51.0 1.4e-53 207.6
Lsi01g01544 . 3 336 Antiporters AT3G51860 60.0 5.9e-113 404.8
Lsi03g02209 . 92 367 Antiporters AT3G51860 67.4 7.5e-100 361.3
Lsi10g00028 . 64 416 Antiporters AT3G51860 50.3 6.4e-83 305.1
Lsi07g01450 . 24 260 Antiporters AT3G51860 53.5 1.6e-57 220.7
Lsi01g01544 . 31 364 Antiporters AT5G01490 52.9 6.4e-104 374.8
Lsi03g02209 . 87 372 Antiporters AT5G01490 59.4 8.3e-88 321.2
Lsi10g00028 . 17 445 Antiporters AT1G55720 67.0 1.0e-146 516.9
Lsi07g00632 . 58 377 Antiporters AT1G55720 65.9 5.5e-116 414.8
Lsi07g01450 . 21 396 Antiporters AT1G55720 57.0 7.9e-99 357.8
Lsi10g00028 . 17 445 Antiporters AT1G55730 70.8 1.8e-159 559.3
Lsi07g00632 . 58 377 Antiporters AT1G55730 71.1 3.6e-128 455.3
Lsi07g01450 . 21 400 Antiporters AT1G55730 60.5 7.5e-110 394.4
Lsi06g00185 . 4 473 Antiporters AT5G27150 68.3 1.4e-195 679.5
Lsi09g01394 . 23 479 Antiporters AT5G27150 66.9 9.6e-184 640.2
Lsi02g02351 . 25 514 Antiporters AT5G27150 64.4 3.8e-180 628.2
Lsi02g01865 . 12 336 Antiporters AT5G27150 62.2 1.6e-106 383.6
Lsi09g01394 . 23 496 Antiporters AT3G06370 64.2 1.1e-177 620.2
Lsi06g00185 . 5 473 Antiporters AT3G06370 61.6 1.8e-169 592.8
Lsi02g02351 . 25 516 Antiporters AT3G06370 61.5 1.9e-166 582.8
Lsi02g01865 . 5 336 Antiporters AT3G06370 58.1 5.7e-99 358.6
Lsi02g02350 . 237 591 Antiporters AT3G06370 55.3 9.8e-99 357.8
Lsi06g00185 . 18 458 Antiporters AT5G55470 52.5 2.0e-141 499.6
Lsi09g01394 . 20 466 Antiporters AT5G55470 52.3 1.2e-138 490.3
Lsi02g02351 . 11 500 Antiporters AT5G55470 51.9 2.1e-135 479.6
Lsi02g01865 . 1 338 Antiporters AT5G55470 63.1 2.4e-110 396.4
Lsi02g01866 . 2 223 Antiporters AT5G55470 53.0 2.3e-57 220.3
Lsi06g00185 . 10 475 Antiporters AT3G05030 69.4 1.1e-195 679.9
Lsi09g01394 . 23 479 Antiporters AT3G05030 67.4 1.1e-187 653.3
Lsi02g02351 . 25 517 Antiporters AT3G05030 64.2 1.8e-182 636.0
Lsi02g01865 . 12 336 Antiporters AT3G05030 62.7 2.4e-105 379.8
Lsi02g02350 . 237 591 Antiporters AT3G05030 54.8 1.5e-99 360.5
Lsi07g00483 . 102 689 Antiporters AT1G15460 67.5 4.1e-225 777.7
Lsi08g01171 . 99 655 Antiporters AT1G15460 65.1 6.2e-213 737.3
Lsi03g01144 . 102 645 Antiporters AT1G15460 58.8 1.4e-180 629.8
Lsi02g00374 . 102 644 Antiporters AT1G15460 57.4 2.7e-176 615.5
Lsi09g00535 . 1 184 Antiporters AT1G15460 63.3 8.4e-69 258.5
Lsi03g01144 . 3 709 Antiporters AT3G06450 69.9 2.8e-295 1011.1
Lsi02g00374 . 3 683 Antiporters AT3G06450 69.2 2.0e-280 961.8
Lsi08g01171 . 3 638 Antiporters AT3G06450 55.8 3.2e-214 741.9
Lsi07g00483 . 6 667 Antiporters AT3G06450 54.4 8.1e-210 727.2
Lsi09g00535 . 1 184 Antiporters AT3G06450 51.8 7.2e-57 219.2
Lsi03g01144 . 1 716 Antiporters AT2G47160 79.5 0.0e+00 1162.5
Lsi02g00374 . 1 670 Antiporters AT2G47160 74.8 5.1e-305 1043.5
Lsi08g01171 . 4 638 Antiporters AT2G47160 57.8 3.4e-216 748.4
Lsi07g00483 . 1 667 Antiporters AT2G47160 54.6 2.5e-211 732.3
Lsi09g00535 . 1 184 Antiporters AT2G47160 54.7 3.8e-58 223.4
Lsi07g00483 . 1 681 Antiporters AT1G74810 67.8 1.7e-270 928.7
Lsi08g01171 . 4 655 Antiporters AT1G74810 65.7 4.2e-253 870.9
Lsi03g01144 . 7 645 Antiporters AT1G74810 59.5 2.6e-218 755.4
Lsi02g00374 . 7 644 Antiporters AT1G74810 58.5 2.9e-217 751.9
Lsi09g00535 . 1 184 Antiporters AT1G74810 60.6 1.4e-67 254.6
Lsi03g01144 . 1 708 Antiporters AT3G62270 81.8 0.0e+00 1162.5
Lsi02g00374 . 1 694 Antiporters AT3G62270 76.1 3.3e-309 1057.4
Lsi08g01171 . 4 638 Antiporters AT3G62270 59.1 4.4e-221 764.6
Lsi07g00483 . 1 667 Antiporters AT3G62270 56.3 2.1e-215 745.7
Lsi09g00535 . 1 184 Antiporters AT3G62270 54.9 4.8e-58 223.0
Lsi08g01171 . 4 648 Antiporters AT4G32510 68.5 7.1e-261 896.7
Lsi07g00483 . 1 681 Antiporters AT4G32510 63.3 1.8e-251 865.5
Lsi03g01144 . 1 645 Antiporters AT4G32510 55.3 1.8e-208 722.6
Lsi02g00374 . 1 650 Antiporters AT4G32510 54.3 1.3e-206 716.5
Lsi09g00535 . 1 184 Antiporters AT4G32510 61.4 7.1e-67 252.3
Lsi08g01171 . 4 646 Antiporters AT5G25430 70.1 4.9e-262 900.6
Lsi07g00483 . 2 675 Antiporters AT5G25430 64.1 3.3e-242 834.7
Lsi03g01144 . 7 645 Antiporters AT5G25430 56.2 4.1e-208 721.5
Lsi02g00374 . 7 656 Antiporters AT5G25430 54.8 1.2e-202 703.4
Lsi09g00535 . 1 184 Antiporters AT5G25430 58.5 4.7e-63 239.6
Lsi09g00728 . 1 706 Antiporters AT2G01980 55.1 2.9e-198 689.5
Lsi09g00725 . 12 282 Antiporters AT2G01980 72.7 2.1e-103 374.4
Lsi09g00728 . 1 273 Antiporters AT1G14660 67.8 4.6e-104 375.9
Lsi09g00725 . 23 282 Antiporters AT1G14660 69.6 1.8e-100 364.0
Lsi06g00267 . 19 587 Antiporters AT5G11800 75.4 2.1e-224 775.4
Lsi08g01579 . 51 594 Antiporters AT5G11800 75.8 7.1e-212 733.8
Lsi05g01300 . 57 520 Antiporters AT5G11800 69.9 7.4e-169 590.9
Lsi05g01300 . 31 520 Antiporters AT5G51710 81.8 1.5e-219 759.2
Lsi06g00267 . 51 560 Antiporters AT5G51710 68.8 1.1e-182 636.7
Lsi08g01579 . 49 568 Antiporters AT5G51710 63.5 3.9e-167 585.1
Lsi06g00267 . 39 584 Antiporters AT2G19600 80.7 1.7e-229 792.3
Lsi08g01579 . 41 594 Antiporters AT2G19600 73.8 3.3e-209 724.9
Lsi05g01300 . 35 520 Antiporters AT2G19600 67.5 1.7e-165 579.7
Lsi05g00232 . 148 575 Antiporters AT1G49810 75.1 1.2e-176 616.3
Lsi05g00232 . 1 593 Antiporters AT3G19490 75.6 2.8e-245 844.7
Lsi10g01061 . 99 569 Antiporters AT5G12860 91.1 4.0e-249 857.4
Lsi03g00956 . 85 591 Antiporters AT5G64280 64.4 1.6e-186 649.4
Lsi03g00956 . 1 590 Antiporters AT5G64290 66.9 1.1e-206 716.5
Lsi11g01699 . 3 379 Antiporters AT4G28390 80.7 2.9e-174 608.2
Lsi08g01485 . 66 452 Antiporters AT4G28390 74.4 4.9e-158 554.3
Lsi08g01484 . 21 407 Antiporters AT4G28390 74.4 4.9e-158 554.3
Lsi02g00140 . 32 366 Antiporters AT4G28390 58.2 1.8e-107 386.3
Lsi08g01485 . 64 453 Antiporters AT3G08580 78.1 3.6e-169 591.3
Lsi08g01484 . 19 408 Antiporters AT3G08580 78.1 3.6e-169 591.3
Lsi11g01699 . 32 378 Antiporters AT3G08580 77.9 6.4e-150 527.3
Lsi02g00140 . 8 366 Antiporters AT3G08580 50.6 4.5e-95 345.1
Lsi08g01485 . 64 453 Antiporters AT5G13490 81.7 1.3e-179 625.9
Lsi08g01484 . 19 408 Antiporters AT5G13490 81.7 1.3e-179 625.9
Lsi11g01699 . 1 378 Antiporters AT5G13490 75.6 2.5e-162 568.5
Lsi02g00140 . 54 366 Antiporters AT5G13490 59.2 1.6e-103 373.2
Lsi02g00140 . 50 359 Antiporters AT5G17400 76.5 3.0e-134 474.9
Lsi11g01699 . 79 365 Antiporters AT5G17400 63.8 3.4e-109 391.7
Lsi08g01485 . 153 442 Antiporters AT5G17400 63.4 1.1e-107 386.7
Lsi08g01484 . 108 397 Antiporters AT5G17400 63.4 1.1e-107 386.7
Lsi06g00138 . 4 588 Antiporters AT1G08960 62.2 5.9e-181 630.9
Lsi03g01573 . 16 566 Antiporters AT5G17850 51.6 1.0e-151 533.9
Lsi03g01078 . 1 562 Antiporters AT2G47600 68.4 3.2e-211 731.5
Lsi07g00504 CCT 1 300 Antiporters AT1G79900 68.4 1.2e-116 416.4
Lsi02g02791 CCT 1 307 Antiporters AT1G79900 67.5 3.6e-116 414.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006357 1 0 2 1 2 1 2 1 1 0 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00956 Lsi_Chr03 FPKM 12.923432 13.389831 24.613331 26.568872 24.285904 23.826426 28.164463 33.648769 35.109142 34.992832