Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00956 ATGGAAAATTTTGCCCTCCAATCTGTCTCCACTACCACTTTTTTTTCCCCTCATTCTCCCATTTCTCGAATTTCTCTCCTCCATCGCTCTAAACCCATTTCCCATTCCCTCTCCTTTTCCACTTCCCTTCATTTTTCTCGCTCGATTTCGCTATTTCAATCGACCCCACCAATCTCCCAATCCCCCCTTTTCACTTCTCGATCTTCCCTTTTCAATCCCCTCTTCAATCCCAAATTGCGTCGAGCCTCTCCAATGCGAACCAGTTCTTCTCAATCGCCGGATAATCAGTCATTGCCACCGACCCGACCGACCCCACCTCCCCGACAAGGTGCTAAGCCAATCCCTTTTCTAGTTTCCATCGCTATTGGCCTCATTGTTCGATTTGCCATCCCGAAACCGGTCGAGGTTTCAGCTCAAGCCTGGCAGTTGCTCTCGATTTTCTTATCTACCATTGCTGGACTTGTTTTGAGTCCCTTGCCGGTTGGTGCTTGGGCGTTTCTTGGCTTGACTGTCACTGTGGTTACTAAGACTTTGACGTTTGCTGCTGCTTTTAATGCCTTCACGAGTGAGGTCATTTGGTTGATTGTCATTTCCTTTTTTTTCGCTCGTGGGTTTGTGAAAACTGGGTTGGGGGATCGAATTGCGACGTATTTTGTTAAATGGTTGGGGAAGAGTACGCTTGGTTTGTCTTATGGTTTGACGATTAGTGAGGCTTTGATTGCCCCTGCTATGCCGAGCACTACGGCCAGAGCTGGGGGTGTGTTTTTGCCTATTATTAAGTCTTTGTCGCTTGCTGCTGATAGTAAACCGAACCACCCATCGTCTAAAAAGATCGGTGCTTACCTTGTTCAATCTCAGTTTCAGTGTGCTGGTAACTCTAGTGCCCTTTTCCTAACTGCTGCTGCTCAAAATTTGTTGTGCCTTAAATTGGCTGAAGAACTTGGTGTGCAAATATCTAGCCCCTGGCTTACTTGGGCCAAGTTTGCTTGTGTGCCAGCAATCATTGGTCTCTTAGTAACTCCGGCGATCTTATACAAGTTGTTTCCTCCAGAAACCAAGGACACACCTGAGGCCCCAGCCATGGCTACAAGAAAATTGGAGGCTATGGGTCCTGTCACCAAAAACGAATGGGTCATGGTCGGTACCATGCTTATTGCAGTCTCTTTATGGATTGCTGGTCCCCTGCTCCTAGTCTACTTCTTGAAACCATTTTCTCATGAGATTCCTGATCTTACTAGAGAGGCCCTTAAAATACCAAGTGTTGTAGCTGCAATGATTGGTTTATCAATACTCCTTACACTGGGAGTCCTAAACTGGGATGACTGCTTAGCCGAAAAGTCAGCCTGGGATACATTAGCTTGGTTCGCTGTCCTGGTGGGCATGGCTGGCCAATTGACAAGTCTTGGTCTCGTGGGCTGGATGTCGAATTGTGTGGCCAGTTTGCTTAAGTCTATGTCTCTCAGCTGGCCTGCAGCATTTGCTATTCTTCAGGCATCATACTTCTTCGTTCACTACCTCTTCGCTAGCCAAACCGGTCACGTTGGCGCTTTGTACTCGGCATTCCTTGCAATGCACTTGGCTGCCAAGGTACCAGGTGTGTTGGCAGCTCTGGCCTTAGCTTACAACACAAATCTCTTCGGCGCTCTGACTCATTACAGCAGTGGCCAAGCTGCTGTATACTATGGAGCGGGTTACGTCGAGCTACCAGATGTATTCAAAATCGGTTTCGTGATGGCCCTCATAAATGGTATTATCTGGACTGTGGTTGGAGAGAGAACGAAGAAGAAGAAGAAGAAAGGGTTTGGCCATTCGAATATCGCCACTTTGATTCAGTCTAATCCACCCCAACACTTCGCCGAATTCCGATTTCTGGGGCTTTGGATTCTTAAGAGACGTAAGCCATGGATTTAG 1911 47.41 MENFALQSVSTTTFFSPHSPISRISLLHRSKPISHSLSFSTSLHFSRSISLFQSTPPISQSPLFTSRSSLFNPLFNPKLRRASPMRTSSSQSPDNQSLPPTRPTPPPRQGAKPIPFLVSIAIGLIVRFAIPKPVEVSAQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTVTVVTKTLTFAAAFNAFTSEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTISEALIAPAMPSTTARAGGVFLPIIKSLSLAADSKPNHPSSKKIGAYLVQSQFQCAGNSSALFLTAAAQNLLCLKLAEELGVQISSPWLTWAKFACVPAIIGLLVTPAILYKLFPPETKDTPEAPAMATRKLEAMGPVTKNEWVMVGTMLIAVSLWIAGPLLLVYFLKPFSHEIPDLTREALKIPSVVAAMIGLSILLTLGVLNWDDCLAEKSAWDTLAWFAVLVGMAGQLTSLGLVGWMSNCVASLLKSMSLSWPAAFAILQASYFFVHYLFASQTGHVGALYSAFLAMHLAAKVPGVLAALALAYNTNLFGALTHYSSGQAAVYYGAGYVELPDVFKIGFVMALINGIIWTVVGERTKKKKKKGFGHSNIATLIQSNPPQHFAEFRFLGLWILKRRKPWI 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18309089 18321419 - Lsi03G009560.1 Lsi03g00956 658706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00956 636 PANTHER DICARBOXYLIC ACID TRANSPORTER2 414 591 - -
Lsi03g00956 636 TIGRFAM dass: transporter, divalent anion:Na+ symporter (DASS) family 132 590 IPR001898 GO:0016020|GO:0022857|GO:0055085
Lsi03g00956 636 PANTHER DICARBOXYLATE TRANSPORTER 2.1, CHLOROPLASTIC 45 395 IPR030676 -
Lsi03g00956 636 MobiDBLite consensus disorder prediction 82 97 - -
Lsi03g00956 636 Pfam Sodium:sulfate symporter transmembrane region 116 590 IPR001898 GO:0016020|GO:0022857|GO:0055085
Lsi03g00956 636 MobiDBLite consensus disorder prediction 81 109 - -
Lsi03g00956 636 PANTHER DICARBOXYLIC ACID TRANSPORTER2 45 395 - -
Lsi03g00956 636 PANTHER DICARBOXYLATE TRANSPORTER 2.1, CHLOROPLASTIC 414 591 IPR030676 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00956 Lsi-Chr3:18309089 Lsi10g01061 Lsi-Chr10:14855771 3.00E-144 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00956 - K03319 csv:101213018 999.579