Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00982 ATGAAAGAGGAGCAAAATCAGCTGATGAACTCAGTTTCAGAACTCCAGTTTTGGAAAAGAGAGGCAGCTGCTTTGAAGCAACAACTGCATTACTTGCAAGAATGTCACAGACAACTGATGGGTGAAGAACTATCTGGCCTGAGTGTCAAAGATCTACAAAATCTAGAAAGCCAGTTGGAAATGAGTTTGAAAGGTGTCCGTGTGAAGAAGGAAAAGATTTTAAGTGATGAAATTACTGAACTAAGACAGAAGGTTTTCCCCACTGCCTATGGACCAATGGAAGTGGATAAAACGAGCAGTAGCTCAGTTCATCAATTCACTATCACCAATAGATATAGTATGCCTGCTCCCGTCCATCTACAGCTAAGGCAGCCACAACCACAAAACAATGAAGCACCAGTACCAGGGATAAAGCTGGGGTATGTTCTAGCAATCTGTGTTCATGACATATGA 453 41.94 MKEEQNQLMNSVSELQFWKREAAALKQQLHYLQECHRQLMGEELSGLSVKDLQNLESQLEMSLKGVRVKKEKILSDEITELRQKVFPTAYGPMEVDKTSSSSVHQFTITNRYSMPAPVHLQLRQPQPQNNEAPVPGIKLGYVLAICVHDI 150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18966933 18972686 + Lsi03G009820.1 Lsi03g00982 658732

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00982 150 Coils Coil 1 28 - -
Lsi03g00982 150 ProSiteProfiles K-box domain profile. 15 128 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi03g00982 150 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 84 - -
Lsi03g00982 150 PANTHER SERUM RESPONSE FACTOR HOMOLOG 89 143 - -
Lsi03g00982 150 Pfam K-box region 13 84 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi03g00982 150 PANTHER - 2 84 - -
Lsi03g00982 150 PANTHER - 89 143 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00982 K09264 K09264; MADS-box transcription factor, plant - csv:101203098 218.779
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00982 Lsi-Chr3:18966933 Lsi01g00825 Lsi-Chr1:6548261 6.84E-24 dispersed
Lsi03g00982 Lsi-Chr3:18966933 Lsi04g02291 Lsi-Chr4:30056403 1.53E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g838 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00943 Cam10g0965 Cec10g1000 Cco10g0961 Clacu10g0988 Cmu10g1771 Cre10g1145 . . . Cone10ag1087 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi03g00982 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000442 3 7 2 1 3 2 5 3 3 3 4 3 5 2 3 8 4 5 5 4 3 3 3 3 3 3 3 9 5 2 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00982 Lsi_Chr03 FPKM 24.426186 27.590607 30.379862 32.141277 20.967312 19.834469 20.822882 29.355268 24.709579 26.479649