Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00986 AATGTTCCACGAGGACCAAAAATTGCTAGAACCATCCTCCACTTCCCATCACCGCCTCACATAAAAGCCCCTCTCCCATTTCTTCTTACACCAAAAACCCTAAACCCTTCGCAAGCCCCAATCAATTTTCTCTCTTCAATTCTCTCTTTTACCTTCGGACATGGCCACCGGCGTGCTGCTCCGTTCTCTTCGACGTCGCGATTTAGCCTCCTCCTCCATTTCAGCTTACCGATCCTAATGCCAAGCCATCATGGGGGAACTCTCACCTTAGCCAATCATGGGCAAGTTTGTCTAGGCCATTCAGGTTCTATTGACTCGCACGAATTAGTTAATTTCATTATCTGTTGGTTTCCATCATTTTACCTGATATTTACGTTGTCTTCTCTGTGCAGTTCAAAGCCTGCTGGGAATGATGTAATTGGTGTTGACTTGGGTACCACCAATTCTTGTGTTGCTGTCATGGAAGGGAAGAATCCAAAAGTTATTGAAAACTCAGAAGGTGCCAGGACCACACCATCGGTGGTTGCTTTCAATCAGAAAGGCGAACTGCTTGTAGGAACACCAGCAAAGAGACAGGCAGTGACAAATCCAACGAATACTGTGTTTGGAACCAAGCGTCTGATTGGTAGACGCTTTGATGACCCTCAGACACAGAAGGAAATGAAGATGGTGCCATACAAAATAGTCAGAGCTCCAAATGGAGATGCTTGGGTTGAAGCAAATGGACAGCAGTACTCACCAAGCCAGATCGGTGCTTTTGTTCTAACAAAGATGAAGGAAACTGCTGAGGCCTACCTTGGAAAGAGTGTGTCTAAGGCTGTGATTACTGTTCCAGCTTATTTCAACGATGCACAGAGACAGGCAACAAAGGATGCTGGCAGGATTGCTGGTTTGGATGTTCTTAGAATTATCAATGAGCCCACTGCTGCTGCACTTTCTTATGGAATGAACAATAAGGAGGGCCTTATTGCTGTCTTTGATCTTGGTGGTGGCACATTCGATGTTTCCATCTTGGAGATATCCAATGGTGTTTTTGAGGTGAAAGCAACAAATGGTGACACATTCTTGGGTGGAGAGGATTTTGACAATGCTCTTTTGGACTTCCTAGTGAGCGAGTTCAAGCGAATGGAGGGAATTGACCTTACGAAGGACAGGCTTGCCTTGCAGAGGCTTAGAGAAGCTGCAGAAAAGGCAAAGATCGAACTGTCATCTACATCTCAGACTGAAATTAACCTCCCATTTATCACTGCTGATGCAACTGGAGCAAAACATCTGAACATCACTTTGACCAGGTCGAAGTTTGAAAGTCTTGTCAATCACTTAATTGAAAGGACAAAGGCCCCATGCAAAAATTGTTTGAAGGATGCTAGTATTTCTATCAAAGAAGTGGATGAAGTGCTTTTAGTTGGTGGAATGACTCGTGTACCGAAGGTACAAGAAATTGTCACAGAAATTTTTGGAAAGAGCCCCAGCAAAGGAGTGAATCCTGATGAAGCGGTTGCTATGGGAGCTGCAATTCAGGGTGGCATTCTTCGTGGTGATGTCAAAGAATTGCTTCTTCTGGATGTTACCCCACTATCACTTGGTATTGAGACACTTGGTGGTATCTTTACAAGGTTGATCAGTCGGAACACTACCATTCCAACTAAGAAGAGTCAGGGATTTGAAGTTGTAGATAGTAGTATAATCAATAAAGTATTTTTATTGCCGTTGCCTTATCTTATCAGATCAACCACTGTGTTCTCAACCGCAGCTGACAATCAGACTCAGGTTGGTATTAAGGTACTGCAAGGTGAGAGGGAAATGGCTTCTGACAACAAACTTCTAGGGGAGTTTGAGTTGGTTGGAATTCCTCCTTCTCCAAGAGGAATGCCTCAAATTGAGGTGACATTTGACATCGATGCCAATGGCATTGTTACTGTCTCTGCTAAGGACAAGTCCACTGGAAAAGAACAACAAATCACCATTCGATCTTCTGGAGGACTCTCAGATGATGAAATTGACAAAATGGTCAAGGAAGCAGAGCTGCATGCCCAGAAGGATCAAGAGAGGAAAGCTCTTATTGACATCAGAAACAGTGCAGATACTACCATCTACAGCATCGAGAAGAGCTTGGGCGAGTACAGGGAGAAAATACCCAGCGAAGTTGCCAAAGAAATCGAGGATGCAGTGTCTGATTTGAGGAAGGCAATGTCAGAAGACAACCTCGAAGAGATCAAGTCAAAACTCGATGCTGCAAACAAAGCTGTGTCTAAGATTGGACAGCATATGACTGGTGGTTCAGGTGGTGATGCTGCTTCTGGAGGATCCCAGGGTGGCGAACAAGCTTCTGAAGCCGAATACGAAGAGGTGAAGAAATAA 2361 44.43 NVPRGPKIARTILHFPSPPHIKAPLPFLLTPKTLNPSQAPINFLSSILSFTFGHGHRRAAPFSSTSRFSLLLHFSLPILMPSHHGGTLTLANHGQVCLGHSGSIDSHELVNFIICWFPSFYLIFTLSSLCSSKPAGNDVIGVDLGTTNSCVAVMEGKNPKVIENSEGARTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTVFGTKRLIGRRFDDPQTQKEMKMVPYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAEAYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLDFLVSEFKRMEGIDLTKDRLALQRLREAAEKAKIELSSTSQTEINLPFITADATGAKHLNITLTRSKFESLVNHLIERTKAPCKNCLKDASISIKEVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVAMGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLISRNTTIPTKKSQGFEVVDSSIINKVFLLPLPYLIRSTTVFSTAADNQTQVGIKVLQGEREMASDNKLLGEFELVGIPPSPRGMPQIEVTFDIDANGIVTVSAKDKSTGKEQQITIRSSGGLSDDEIDKMVKEAELHAQKDQERKALIDIRNSADTTIYSIEKSLGEYREKIPSEVAKEIEDAVSDLRKAMSEDNLEEIKSKLDAANKAVSKIGQHMTGGSGGDAASGGSQGGEQASEAEYEEVKK 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19053513 19057445 + Lsi03G009860.1 Lsi03g00986 658736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00986 786 Gene3D - 140 508 - -
Lsi03g00986 786 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 662 768 IPR029048 -
Lsi03g00986 786 SUPERFAMILY Actin-like ATPase domain 320 511 IPR043129 -
Lsi03g00986 786 PANTHER HEAT SHOCK PROTEIN 70KDA 577 768 IPR013126 GO:0005524|GO:0140662
Lsi03g00986 786 PANTHER HEAT SHOCK PROTEIN 70KDA 123 557 IPR013126 GO:0005524|GO:0140662
Lsi03g00986 786 Gene3D - 662 759 IPR029048 -
Lsi03g00986 786 CDD HSPA9-like_NBD 136 511 - -
Lsi03g00986 786 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 513 559 IPR029047 -
Lsi03g00986 786 Coils Coil 381 408 - -
Lsi03g00986 786 Gene3D - 315 495 - -
Lsi03g00986 786 SUPERFAMILY Actin-like ATPase domain 139 319 IPR043129 -
Lsi03g00986 786 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 511 661 IPR029047 -
Lsi03g00986 786 PANTHER HEAT SHOCK 70 KDA PROTEIN, MITOCHONDRIAL 577 768 - -
Lsi03g00986 786 Pfam Hsp70 protein 577 757 IPR013126 GO:0005524|GO:0140662
Lsi03g00986 786 Pfam Hsp70 protein 139 559 IPR013126 GO:0005524|GO:0140662
Lsi03g00986 786 ProSitePatterns Heat shock hsp70 proteins family signature 2. 325 338 IPR018181 -
Lsi03g00986 786 ProSitePatterns Heat shock hsp70 proteins family signature 3. 466 480 IPR018181 -
Lsi03g00986 786 PANTHER HEAT SHOCK 70 KDA PROTEIN, MITOCHONDRIAL 123 557 - -
Lsi03g00986 786 Coils Coil 717 749 - -
Lsi03g00986 786 Gene3D Actin; Chain A, domain 4 358 445 - -
Lsi03g00986 786 Hamap Chaperone protein DnaK [dnaK]. 136 784 IPR012725 GO:0005524|GO:0006457|GO:0051082
Lsi03g00986 786 ProSitePatterns Heat shock hsp70 proteins family signature 1. 142 149 IPR018181 -
Lsi03g00986 786 PRINTS 70kDa heat shock protein signature 138 151 - -
Lsi03g00986 786 PRINTS 70kDa heat shock protein signature 189 197 - -
Lsi03g00986 786 PRINTS 70kDa heat shock protein signature 517 536 - -
Lsi03g00986 786 PRINTS 70kDa heat shock protein signature 463 479 - -
Lsi03g00986 786 PRINTS 70kDa heat shock protein signature 166 178 - -
Lsi03g00986 786 PRINTS 70kDa heat shock protein signature 494 514 - -
Lsi03g00986 786 PRINTS 70kDa heat shock protein signature 273 293 - -
Lsi03g00986 786 PRINTS 70kDa heat shock protein signature 331 341 - -
Lsi03g00986 786 MobiDBLite consensus disorder prediction 750 786 - -
Lsi03g00986 786 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 575 695 IPR029047 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00986 Lsi-Chr3:19053513 Lsi09g01011 Lsi-Chr9:13848300 0 dispersed
Lsi03g00986 Lsi-Chr3:19053513 Lsi01g01415 Lsi-Chr1:12295409 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00986 K04043 - csv:101216102 1157.13