Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00996 ATGGCGTGGTGGGCGCCTTCAAAATTTGACCCTGTAAAATCACCCATGCTTTTTTTCGAAAAGGGTCTGCCTGTCATCCCTCCGGTACCTCCTGATGTTGGCTTCGACATGGTTTTGAAACATATGATATCATATGTGGAGCAAAGAATGCCACCTGGTGCAATCAAATTCTTCCGTACGCAATCACCTAGGCATTTTGAAGGAGGTGACTGGTACCAAGGTGGTTCTTGCCAGCGGCAGCAGCCTCTATCTCCGCTACAGGCTGAGGATCTGTTCTCGCTGACGAATAACAGAACAAATGTCGAGGTTCGACTCGTAAATGAGCACCTTTTCAAGGCCCTCAATGGAAGTAGTTTCCATATTTTGAACATAACTCCCATGAGTGAGTTGAGAGCAGATGCACATCCTGCCTCAGCTGGTGGAAAGAAGCACGACGATTGTATGCACTGGTGCTTGCCGGGACTTATAGATACATGGAACGACTTTTTCATGTTCCTCTTCTTCCTAACAAATGCCCAAAACTCCCCTCAAGACTACCTTGCCCTACACAACAGTGCTCGGGCGCAGGTCGGTGTCGGTCCCATGACATGGAACAACACCGTCGCTGCCTACGCTCAAGCCTATGCCAATCAAAGGAGAAATGATTGCGCCTTGGTTCACTCAAGCGGGCCATACGGCGAAAACATAGCCGTAGGCTACTACCCCGAGTTCACCGGTGCAGATGGCGTAAAGTTGTGGGTGGCAGAGAAGCCTTTATACGACTATGCATCGAACTCGTGCAAGGGTGGCGAGTGTGGACACTACACTCAGGTGGTGTGGCGAACCTCCATACATCTTGGATGTGCAAGGGTGGCCTGTAAGGGGTGGGAGATTCATTTTTACTATAGGGTGGAAGATTCAAATGTTTGA 909 49.5 MAWWAPSKFDPVKSPMLFFEKGLPVIPPVPPDVGFDMVLKHMISYVEQRMPPGAIKFFRTQSPRHFEGGDWYQGGSCQRQQPLSPLQAEDLFSLTNNRTNVEVRLVNEHLFKALNGSSFHILNITPMSELRADAHPASAGGKKHDDCMHWCLPGLIDTWNDFFMFLFFLTNAQNSPQDYLALHNSARAQVGVGPMTWNNTVAAYAQAYANQRRNDCALVHSSGPYGENIAVGYYPEFTGADGVKLWVAEKPLYDYASNSCKGGECGHYTQVVWRTSIHLGCARVACKGWEIHFYYRVEDSNV 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19218273 19229016 + Lsi03G009960.1 Lsi03g00996 658746

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00996 302 SUPERFAMILY PR-1-like 167 295 IPR035940 -
Lsi03g00996 302 Gene3D CAP 170 299 IPR035940 -
Lsi03g00996 302 ProSitePatterns CRISP family signature 1. 266 276 IPR018244 GO:0005576
Lsi03g00996 302 CDD CAP_PR-1 176 286 - -
Lsi03g00996 302 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 2 164 IPR026057 GO:0016740
Lsi03g00996 302 PRINTS Venom allergen 5 signature 264 283 IPR002413 -
Lsi03g00996 302 PRINTS Venom allergen 5 signature 195 213 IPR002413 -
Lsi03g00996 302 PRINTS Venom allergen 5 signature 240 255 IPR002413 -
Lsi03g00996 302 PRINTS Allergen V5/Tpx-1 family signature 195 213 IPR001283 -
Lsi03g00996 302 PRINTS Allergen V5/Tpx-1 family signature 265 281 IPR001283 -
Lsi03g00996 302 PRINTS Allergen V5/Tpx-1 family signature 242 255 IPR001283 -
Lsi03g00996 302 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 13 3 165 IPR029968 -
Lsi03g00996 302 SMART SCP_3 174 298 IPR014044 -
Lsi03g00996 302 Pfam Cysteine-rich secretory protein family 180 290 IPR014044 -
Lsi03g00996 302 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 3 165 IPR029962 GO:0016413
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00996 - - - csv:101217679 327.791
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00996 Lsi-Chr3:19218273 Lsi03g00618 Lsi-Chr3:7703271 1.39E-47 dispersed
Lsi03g00996 Lsi-Chr3:19218273 Lsi03g00997 Lsi-Chr3:19231417 4.13E-50 tandem
Lsi03g00627 Lsi-Chr3:7796401 Lsi03g00996 Lsi-Chr3:19218273 6.96E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g806 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00948 Cam10g0971 . Cco10g0965 Clacu10g0993 Cmu10g1776 Cre10g1150 . . . . . . . . . . . . . . . . Sed07g1156 Cmo04g00452 . . . . . . Cpe01g00379 Bhi11g01090 Tan01g0593 Cmetu07g0703 . . Mch10g0398 . . . . . . . . Lsi03g00996 . . Cme07g02222
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001430 0 2 0 0 0 2 0 1 1 3 2 2 18 1 1 16 2 0 9 2 2 0 1 1 2 2 0 2 1 0 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00996 Lsi_Chr03 FPKM 0.750983 0.687258 0.305601 0.383566 1.966399 1.747296 2.204782 0.280766 0.178917 0.0