Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00997 ATGCGGACTCAAAAGCCTTTCATTATTGCCATTCTCTTGGCCACTTCCATCTTTATCCTAAGCCAAACACATGCTCAAAACTCACCTCAAGACTATGTTACACTACACAACCGTGCTCGAGCCGAAGTTGGCGTCGGCCCCGTTACATGGAACGAGACAGTGGCTGCCTACGCTCAAGCCTATGCGAACCAAAGGAGGAAGGACTGCATCATGGTTAACTCAGGCGGGCCATATGGCGAAAACATACTCGCTGGCTATTTCCCTGAAATCAGTGGAGCATTTGCAGTGAAGTTTTGGTTAGATGAGAAGCGTTTATACAATCCTACGTCGAACACGTGCGTGAAGGGTGAGTGTAAACATTATACCCAAGTGGTGTGGCGAAACTCAGTGCAGATTGGATGTGCTAGAGTTTTATGTAACACTAATTCTCAATTTGTTATATGTAATTATCATCCTCCTGGCAATATTGTTGGAGAAAGACCTTATGATTCTTCAATCTAA 501 44.51 MRTQKPFIIAILLATSIFILSQTHAQNSPQDYVTLHNRARAEVGVGPVTWNETVAAYAQAYANQRRKDCIMVNSGGPYGENILAGYFPEISGAFAVKFWLDEKRLYNPTSNTCVKGECKHYTQVVWRNSVQIGCARVLCNTNSQFVICNYHPPGNIVGERPYDSSI 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19231417 19231917 + Lsi03G009970.1 Lsi03g00997 658747

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00997 166 ProSitePatterns CRISP family signature 2. 145 156 IPR018244 GO:0005576
Lsi03g00997 166 PANTHER PATHOGENESIS-RELATED PROTEIN 1 19 162 - -
Lsi03g00997 166 Gene3D CAP 21 166 IPR035940 -
Lsi03g00997 166 PRINTS Venom allergen 5 signature 93 108 IPR002413 -
Lsi03g00997 166 PRINTS Venom allergen 5 signature 48 66 IPR002413 -
Lsi03g00997 166 PRINTS Venom allergen 5 signature 117 136 IPR002413 -
Lsi03g00997 166 Pfam Cysteine-rich secretory protein family 34 150 IPR014044 -
Lsi03g00997 166 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 19 162 IPR001283 -
Lsi03g00997 166 SMART SCP_3 27 158 IPR014044 -
Lsi03g00997 166 SUPERFAMILY PR-1-like 27 163 IPR035940 -
Lsi03g00997 166 PRINTS Allergen V5/Tpx-1 family signature 118 134 IPR001283 -
Lsi03g00997 166 PRINTS Allergen V5/Tpx-1 family signature 95 108 IPR001283 -
Lsi03g00997 166 PRINTS Allergen V5/Tpx-1 family signature 48 66 IPR001283 -
Lsi03g00997 166 PRINTS Allergen V5/Tpx-1 family signature 145 158 IPR001283 -
Lsi03g00997 166 CDD CAP_PR-1 29 162 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00997 K13449 PR1; pathogenesis-related protein 1 - csv:105436021 223.016
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi03g00627 Lsi03g00997 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00997 Lsi-Chr3:19231417 Lsi03g00606 Lsi-Chr3:7585653 7.34E-60 dispersed
Lsi03g00996 Lsi-Chr3:19218273 Lsi03g00997 Lsi-Chr3:19231417 4.13E-50 tandem
Lsi10g00583 Lsi-Chr10:8459728 Lsi03g00997 Lsi-Chr3:19231417 9.76E-32 transposed
Lsi03g00624 Lsi-Chr3:7766711 Lsi03g00997 Lsi-Chr3:19231417 7.95E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g802 . . Bda06g01145 . . . . . Cmo19g00540 . . . . . . Cpe04g00339 Cpe15g00419 . . . . . . . Cla02g00713 Cam02g0763 Cec02g0761 Cco02g0787 Clacu02g0754 Cmu02g0748 Cre02g1065 . . . . Lsi03g00627 Csa07g00657 . Cme01g00145 . . . . . . . . Sed07g1155 . . Cma11g01688 . . . . . Bhi11g01091 Tan01g0594 Cmetu07g1308 . . . . . . . . . . . Lsi03g00997 . Chy01g00154 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001430 0 2 0 0 0 2 0 1 1 3 2 2 18 1 1 16 2 0 9 2 2 0 1 1 2 2 0 2 1 0 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00997 Lsi_Chr03 FPKM 11.581603 12.465401 1.971277 2.741246 9.019029 9.001122 10.712278 0.0 0.059858 0.126131