Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01000 ATGGATCCCTGCCCCTTCCTTCGGGTTCTCGTCGGAAACCTAGCGCTCAAGTTTCCAGTCGCCGCCAAACCGTCCTTCTCCGGCGTTCATCCCTCGAGTTCTCCATGCTTTTGCAAAATCAAACTCAACGATTTCCCGACGCAGTTCGTCACCGTTCCTCTCGTCGTCGACGGCGATACTTCTGGCGCGGCCAGTTCTTCCTCTTCTTCTTCTTCTTCTTCTGTTTCTTCACAATCTCACTCATCACTCGCTGCCTGCTTCAGCCTCAACAAATCTCAGATTGAGAAGCTTGTAAAGCGGAAGGATCCGTCAGTGAAGATCGAAGTCTACACCGGTCGCCATGGTCCAGCCACTTGTAGCGGCGACGTCTTCGGAAGCTCCGCTAAGTTACTCGGCCGAATCATTGTGCCGCTGACCGGTTCGAGTTTATCAGAAACCAAACCGTGCGTGTTTCAGAACGGTTGGACCGGAATTGGCGAGGGCAAAAAAGGTTACTCATCGGCTCAATTGCACTTGACGGTTCGTTCCGAGCCGGACCCGAGATTCGTGTTCCGGTTCGACAGTGAACCGGAGTGCAGTCCTCAGGTTTTTCAGGTGCAAGGAAGTGTACAGCAACCGGTTTTTACTTGCAAATTCGGTTTCAGAAACGAACGTGATTGGGATCGTTCAAGGTCGTCAATTACTGAACAAAGTAGCACATCGAAGAGTTGGTTACCGAAGATCCGATCCGAAAGGGACCAATCGGCAAAAGAACGAAAAGGATGGTCAATAACGATCCACGACCTTTCCGGATCGCCGGTCGCCGCCGCGTCGATGGTGACACCATTCGTACCATCGCCAGGATCGCACCGTGTTAGCCGGTCAAATCCCGGCGCGTGGCTGATTCTCCGCCCAGTCGATGGTAGCTGGCGCCCGTGGGGCCGCCTCGAGGCATGGAGGGAGAGCGGCGGCTCCGATTCAATCGGATACCGGTTCGAGCTACTCCCGGCGACTTCCGCCGCCGCCACGTTGGCGAACTCCACCATAAGCTCTGGCAGCGGCGGGAGGTTCACGATTGACATGACCGGCAGCGCATCGCCAGCGATTAGCCCTAACGGAAGTTTCGATCTCGGGTCCGGATCCGGATCTCGACCCGGATCCGGGGATTTCGGGTACTTGACGGGGTATCAGTACAAAGGGTTTGTGATGTCGACGATGGTGCAAGGGATAAAGAAGAAGAGTAGGAGGCCGGAGGTGGAGGTGGCGGTGCAGCACGTGACATGCACGGAGGACGCGGCGGTGTTTGTGGCGTTGGCGGCGGCGGTGGACCTGAGCATGGACGCCTGCAGGCTGTTCTCTCAGAAGCTAAGGAAGGAGCTGAGGCAATGA 1368 56.14 MDPCPFLRVLVGNLALKFPVAAKPSFSGVHPSSSPCFCKIKLNDFPTQFVTVPLVVDGDTSGAASSSSSSSSSSVSSQSHSSLAACFSLNKSQIEKLVKRKDPSVKIEVYTGRHGPATCSGDVFGSSAKLLGRIIVPLTGSSLSETKPCVFQNGWTGIGEGKKGYSSAQLHLTVRSEPDPRFVFRFDSEPECSPQVFQVQGSVQQPVFTCKFGFRNERDWDRSRSSITEQSSTSKSWLPKIRSERDQSAKERKGWSITIHDLSGSPVAAASMVTPFVPSPGSHRVSRSNPGAWLILRPVDGSWRPWGRLEAWRESGGSDSIGYRFELLPATSAAATLANSTISSGSGGRFTIDMTGSASPAISPNGSFDLGSGSGSRPGSGDFGYLTGYQYKGFVMSTMVQGIKKKSRRPEVEVAVQHVTCTEDAAVFVALAAAVDLSMDACRLFSQKLRKELRQ 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19261650 19263556 - Lsi03G010000.1 Lsi03g01000 658750

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01000 455 PANTHER F2J10.8 PROTEIN 1 455 - -
Lsi03g01000 455 MobiDBLite consensus disorder prediction 223 253 - -
Lsi03g01000 455 PANTHER OS08G0163500 PROTEIN 1 455 IPR010410 -
Lsi03g01000 455 MobiDBLite consensus disorder prediction 239 253 - -
Lsi03g01000 455 Pfam Protein of unknown function (DUF1005) 1 454 IPR010410 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01000 - - - bhj:120092083 844.728
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01000 Lsi-Chr3:19261650 Lsi04g02313 Lsi-Chr4:30350024 2.16E-160 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g786 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00953 Cam10g0978 Cec10g1008 Cco10g0972 Clacu10g1000 Cmu10g1782 Cre10g1156 . . . . . . . . . . . . . . . . Sed07g1152 Cmo04g00456 Cmo16g00318 . . . . Cpe14g00248 Cpe01g00382 Bhi11g01094 Tan01g0598 Cmetu07g1054 . . Mch10g0402 . . . . . . . . Lsi03g01000 . . Cme07g02217
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008912 1 1 1 2 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 0 1 1 1 1 1 1 2 1 0 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g01000 Lsi_Chr03 FPKM 2.946703 3.63033 5.615004 6.40909 5.897925 8.489089 6.72476 13.257498 11.788386 11.36051