Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01001 ATGAGGAAGAGTAGAGGCAGGCAAAAGGTGGAGATGGTGAAGATGCCAAATGAGAGCAACCTTCAGGTCACCTTCTCGAAGCGTCGGTCCGGTCTCTTCAAGAAAGCTAGCGAGCTTTGCACGCTCTGCGGTGCCGAGATTGCCATCATCGTCTTCTCGCCTGGGAAGAAGGTCTTCTCCTTTGGCCACCCTTGTGTCGAGGCTCTCATCGAGCGCTTTGTGACACGAAACCCTCCACCGAGCTCTGGTACGTTGCAACTAATCGAAGCTCACCGGAATGCCAATGTTCGAGAACTGAATGTGCAACTTACTCAAGTGCTGAACCAGCTAGAAATGGAGCGGAAGCGCGGCGAAGAGTTGAACAAACTGCGGAAGGCAAGCCAGGCACAATGTTGGTGGGAGCTTCCCATAGAAGAAATGGAAATGCATCAACTAGAACAACTTAAAGCATCGTTGGATGAGCTAAAGAAGAATGTCACACAACAAGCTGATCGGATTTTAATTCAAACTTCTAATGGCAATCCGCCGCCACAGTTCTTCCCGACTCCGTCGACACCGGCAAACCCTAACCAGCAACCCGGCCTTTTCGTCGTCGATCCAAAGAACATCATCTCCCATCTTCCTTACAACTATGGTTCCTATGGATCAAGAGGTTTCTTTTGA 663 49.92 MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSFGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNVQLTQVLNQLEMERKRGEELNKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSNGNPPPQFFPTPSTPANPNQQPGLFVVDPKNIISHLPYNYGSYGSRGFF 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19289582 19291400 - Lsi03G010010.1 Lsi03g01001 658751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01001 220 CDD MADS_MEF2_like 6 73 IPR033896 GO:0000977|GO:0045944
Lsi03g01001 220 SUPERFAMILY SRF-like 6 78 IPR036879 GO:0003677|GO:0046983
Lsi03g01001 220 SMART madsneu2 5 64 IPR002100 GO:0003677|GO:0046983
Lsi03g01001 220 PRINTS MADS domain signature 27 42 IPR002100 GO:0003677|GO:0046983
Lsi03g01001 220 PRINTS MADS domain signature 7 27 IPR002100 GO:0003677|GO:0046983
Lsi03g01001 220 PRINTS MADS domain signature 42 63 IPR002100 GO:0003677|GO:0046983
Lsi03g01001 220 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 5 183 - -
Lsi03g01001 220 Gene3D - 17 81 IPR036879 GO:0003677|GO:0046983
Lsi03g01001 220 PANTHER MADS BOX PROTEIN 5 183 - -
Lsi03g01001 220 Coils Coil 138 165 - -
Lsi03g01001 220 ProSiteProfiles MADS-box domain profile. 5 65 IPR002100 GO:0003677|GO:0046983
Lsi03g01001 220 Coils Coil 93 120 - -
Lsi03g01001 220 Gene3D - 83 175 - -
Lsi03g01001 220 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00164 Lsi-Chr1:1641830 Lsi03g01001 Lsi-Chr3:19289582 7.26E-35 dispersed
Lsi03g01001 Lsi-Chr3:19289582 Lsi10g00541 Lsi-Chr10:7768142 9.31E-36 dispersed
Lsi03g01001 Lsi-Chr3:19289582 Lsi02g00875 Lsi-Chr2:8268485 6.11E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24990 PF00319 SRF-TF 3.50E-24 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01001 - - csv:101221957 395.586