Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01003 ATGGCGCTGCCGTCCAACAGGTCGTCTTCTCCGTCCATGCTCGCCGGAAGAACAAGCCCTAATTCTAGAAATTCCGAAATCAGCAACCCCATCCGCCGGAGCTTCTCTGGTAACCCGTTTTCAAAGCCATCGATTGTCGCCAATCCGAGGGGCTTAAACCCGATCACTCCGGCGAATAGTCCCTCTGATTATCCACGAAGGAACTCTGTGAGCAAAGAAAATTCATTTACTTCTCACAACATCCAGGAGAAAGAGAATGGTAAAGATCAGAGTCCGAAACCCGTCCGAGTTCGTTCGCCGATAGTCGGCAAATCGTCGAAGCATTTCATGTCTCCTACAATTTCCGCTGCTTCCAAGATTGCTGTCTCTCCAAAGAAGAAGATTCTGGGCGATCGAAACGAGCCAGTTCGGTCCTCTATTTCATTTTCCGGCATGAAGAGCTCTTTACTCAACCCGGTGAATCAAAGTTTTGAGGCATCAAAAGCACTTGAATCCGATACCAACACTCAAATTCCTCCCGTTTCAAATTCCAAATCAGCTAAAACAGTGAGATTTTGTGGTTTTGAGGTCATTTCTGGTTCGTATGACGATTCGGAATCCACTTACCAATACAATTTGAATCCGGAGGTGGTGGTAACAATGGCAGTCGAAACCGATACGAAGTCTGAAATTGCTCCGGTTTCAAAATCCGCCACTGCAGTAGCACCTACCAAATCATCTAATTCTGATTTCGAGGTAATCTTGGTCTCAAACAACGACTTGGACTCTCCTCCGGCTAAGAGTAATTTAACTGAAGAGTTAGATTGTGTTAATCTTGACCCAAGTTTTAAGATCAGTCCAGTTTCTTCTCCAGTGATAGCACCTCTCGATGCCGATCCATTAATCCCTCCTTATGATCCCAAAACTAATTATCTATCTCCAAGGCCACAGTTCCTTCATTACCGACCAAACCGAAGAATTAATAGATACGAGCCAGACGGTAGACTTGAGGAAAAGCTCTTTTCCTTTGCCAATATTTCCGAGTCTGAATTCATAGAGGAAACTGACTCTGAAGATTCACAGAAGGAATCTGATGAAGCTTCTTTCAATGGATCGCAGACGGAAGAAGAAGAAGAAGAAATGGAGGAGGAGATTAATGTTTCTGAACAAAGCTCCACAGAAACGAAAAAGCAATCGAAGCTTCACTTTTCAAGGATATTCAAGATCCGTTATTTGCTTTTGATTCTGTTCACTGCTTGCTTTTCAATTTGTGTAGTGAATGTCCATGATCCAAATATCTTCAAAAGACCAAGCTCGTTGACAAGGGAGGATCCATCTGAAATTTTTGAGTTTGCAAAAACGAATTTCAATGTGTTGGTTGGGAAACTCGAGGTTTGGCATGTGAATTCTATCTCTTTTATTTCTGATGTGGTTTTCAATTTCAGAGGAGGGCTGCCATTGATTCATTATCAGAACCAGAGTGAGTTCTTCGACGGAGTTTTCAACATGAATGAGCAGTGTCTTGTATTATCTCATCAGACTGTGTGGGAAGAAGAAAACAATTTGAATGCAATGGAAGCCAGGAAGGATAGAGAAATTGACATTTTTGAAGAACCTATTGAGATAGAATGTCAGAATAAAGAAGAAGAAGAATTACCACAAGAAATTGGCATCGAAACTGTTGAAAGAGAATCTGAGAACGACGAACAAAAACAGGAACAGGAACAGGAACAACAAGACTTGTTGCAAGAGATTGAAGCCATGAAGATGAGAGAAATTGGCATTGAAAATGCTGAAAGAGAATCTCAAAATGAAGAGCTAGAAGAAGCATCATTTCAAGAAACTGTAGCCAATGCCAATGAAGAAGAGAATGAACTGAAGCTAGAAGAAGTATCATTTCAAGAAATGGAAGCCAAAGCCAAAGCCAAAGCCAAGGAGGCTTTTGAAGAATCATTACAAGAAATCATTGAAGATGCCTCAGTAAATTCAGCTTCTGATGAACTATGTGAAGAAGACTACGTCCAAGAGAAATCTGAAGAGAATTTTAAAGTTTCTTCATCATCTGATTTTAAATTTCTTGATCAAATTGAACAAGAAGCAGCAGCAGCAACAGGGGAAACAGAGGAAGAAAAGAACACAGAATTTCAATACCAGTCACCTCCAGTTTCTCCTCCAGCTGAACATCAATCTGATTTTGAAGAAGTAAATGGCCGCAAAATCGCCGATCTCATCAGAACAGTAACTGGAATCTCTCGGGATTTCACACAGAACACAGCTATTATAGTATATGCTATACTGCTGTGTTTATCTCTTGCTATACCTGCCCGACTGATTTATGCAAGAAAATCAGGCTCAAAACCATCATCATCCATGGCAGCCATTGCTGAAGAGCAAAAGGAGGAGGAGCCATTGGTTAAAGAGAAGAAGGTGAATCAGAGTCCAGTGGAAGAAGAAGAAGAAGAAGATGAAGAAGATGATATAGATGGAGAATTTTGCTCTTCTGAAACGAGTAGTTTCCAATACAGCAGCATGAAAGAAGGAGAAACAAAAGCAGGGAAGAGATGGAGTGAAGTTCAGAGCCATAGCCAAGGGAGGAGGAAGATGAGGAAGAATTCAAGAAGAGAATCAATGGCTTCTTCTTCTCTAGATGAATATTCAGTGTCCACTTCGGCTTCACCATCTTATGGGAGTTTCACAACCTATGAGAAGATCCCAATCAAGCATGGAAACGGTGAGGAAGAAATTGTGACCCCAGTCAGACGCTCTAGTAGAATTAGAAAGCAACACAATAATAGTTGA 2778 41.32 MALPSNRSSSPSMLAGRTSPNSRNSEISNPIRRSFSGNPFSKPSIVANPRGLNPITPANSPSDYPRRNSVSKENSFTSHNIQEKENGKDQSPKPVRVRSPIVGKSSKHFMSPTISAASKIAVSPKKKILGDRNEPVRSSISFSGMKSSLLNPVNQSFEASKALESDTNTQIPPVSNSKSAKTVRFCGFEVISGSYDDSESTYQYNLNPEVVVTMAVETDTKSEIAPVSKSATAVAPTKSSNSDFEVILVSNNDLDSPPAKSNLTEELDCVNLDPSFKISPVSSPVIAPLDADPLIPPYDPKTNYLSPRPQFLHYRPNRRINRYEPDGRLEEKLFSFANISESEFIEETDSEDSQKESDEASFNGSQTEEEEEEMEEEINVSEQSSTETKKQSKLHFSRIFKIRYLLLILFTACFSICVVNVHDPNIFKRPSSLTREDPSEIFEFAKTNFNVLVGKLEVWHVNSISFISDVVFNFRGGLPLIHYQNQSEFFDGVFNMNEQCLVLSHQTVWEEENNLNAMEARKDREIDIFEEPIEIECQNKEEEELPQEIGIETVERESENDEQKQEQEQEQQDLLQEIEAMKMREIGIENAERESQNEELEEASFQETVANANEEENELKLEEVSFQEMEAKAKAKAKEAFEESLQEIIEDASVNSASDELCEEDYVQEKSEENFKVSSSSDFKFLDQIEQEAAAATGETEEEKNTEFQYQSPPVSPPAEHQSDFEEVNGRKIADLIRTVTGISRDFTQNTAIIVYAILLCLSLAIPARLIYARKSGSKPSSSMAAIAEEQKEEEPLVKEKKVNQSPVEEEEEEDEEDDIDGEFCSSETSSFQYSSMKEGETKAGKRWSEVQSHSQGRRKMRKNSRRESMASSSLDEYSVSTSASPSYGSFTTYEKIPIKHGNGEEEIVTPVRRSSRIRKQHNNS 925
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19310453 19314457 + Lsi03G010030.1 Lsi03g01003 658753

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01003 925 PANTHER TRANSMEMBRANE PROTEIN 1 620 - -
Lsi03g01003 925 MobiDBLite consensus disorder prediction 53 77 - -
Lsi03g01003 925 MobiDBLite consensus disorder prediction 363 380 - -
Lsi03g01003 925 PANTHER TRANSMEMBRANE PROTEIN 602 923 - -
Lsi03g01003 925 Coils Coil 551 632 - -
Lsi03g01003 925 MobiDBLite consensus disorder prediction 692 726 - -
Lsi03g01003 925 MobiDBLite consensus disorder prediction 1 43 - -
Lsi03g01003 925 MobiDBLite consensus disorder prediction 809 824 - -
Lsi03g01003 925 MobiDBLite consensus disorder prediction 871 892 - -
Lsi03g01003 925 MobiDBLite consensus disorder prediction 344 386 - -
Lsi03g01003 925 MobiDBLite consensus disorder prediction 840 857 - -
Lsi03g01003 925 MobiDBLite consensus disorder prediction 777 925 - -
Lsi03g01003 925 PANTHER TRANSMEMBRANE PROTEIN 602 923 - -
Lsi03g01003 925 PANTHER TRANSMEMBRANE PROTEIN 1 620 - -
Lsi03g01003 925 Coils Coil 364 384 - -
Lsi03g01003 925 MobiDBLite consensus disorder prediction 788 808 - -
Lsi03g01003 925 MobiDBLite consensus disorder prediction 1 98 - -
Lsi03g01003 925 MobiDBLite consensus disorder prediction 78 92 - -
Lsi03g01003 925 Coils Coil 686 706 - -
Lsi03g01003 925 MobiDBLite consensus disorder prediction 899 914 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01003 - - - bhj:120090026 1336.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01003 Lsi-Chr3:19310453 Lsi07g00529 Lsi-Chr7:5636985 5.52E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g776 Blo02g00915 . . . . . . Bma12g00305 . . . . . . . . . . . . . . . . Cla10g00958 Cam10g0981 Cec10g1012 . Clacu10g1003 Cmu10g1786 Cre10g1159 . . Cone3ag1049 Cone10ag1065 . . . . . . . . . . . . Sed13g0417 Cmo04g00459 Cmo16g00320 . . . . Cpe14g00250 Cpe01g00385 Bhi11g01098 Tan01g0601 Cmetu07g1160 . Hepe07g0391 Mch10g0405 . . . . . . . . Lsi03g01003 . . Cme07g02214
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005958 3 1 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g01003 Lsi_Chr03 FPKM 11.880597 13.295996 5.245099 6.969226 8.318026 5.377551 7.758101 9.954023 9.911384 11.766416