Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01004 GTCAATGCTATGATGATTCGTGCTCGTTTCAATTTTATTGCCAAAAACCCTGTGTTAGATGTGAAGCGTTTGGGTTTTGGCATGCCGGTTATCGGTCGAGCAGTTTGGTTCAATCAGAGGAGGACGAAGGGGAGAGTTGGTGATGGAGTGAAGGCGACAATGCAGGTGGATTTGGAGGATGAGGAGAGGTTGAAAAGATTGGAGGGTTTAGAGGCGACATTAGGGCTTGATGTTGTAGCGGAGAGGGAATTGAAGGAGAAAGGGTTTTTGGGGATGAGGAAGACGAAGCTTGTATGTACTATCGGTCCAGCGTGTAATGCGATTGAGGATTTGGAGAAGTTAGCGTTGGAAGGTATGAACATTGCGAGATTGAATATGTGCCACAACTCGAGGGAGTGGCATTGCGATGTGATTAAGAAGATCAAGAAGTTAAATGAGGAGAAAGGATTTTGTATTTCGGTGATGATTGATACTGAAGGAAGTCAGATTCATGTGGTTGATCATGGAGCTCCTTCCTCTGTAAAAGTAGAGGTAAATCTTAAATGTTATGTCTCTGTTCTTTTTGCTACAATTGAAGTGATAATCAATCTAAATTCTCTGGTCATCATTGTTCAGGATGGTTCAATCTGGTTGTTTACTGCTGAGAAATTCGAGGGTTCTCGTTCATTCACTGTGCAGGCGAGCTATGAAGGTTTCTCTGAAGGTATCCAAGCGGGCGATTCAATTGTAATTGATGGGGGAATGGCAAGCTTTGAAGTTATTGAAAAGATTGGGAATGATTTAAGCTGCAGGTGCACAGACCCTGGTTTATTTCTTCCTCGAGCGAAGTGCAGCTTTTGGAGAGATGGGAGGCTTGTTGTGAGAAATCACGAGTCTCCCACGCTGTCAAGTAAGGTAGGAACGTCTTTGCTGCATGTCAATACTCATACTGAGAAATTTATTTATGATAAATATAACTGGAAGTTCTCACTTTTAAGGTTTAGATCAAGTATAATGTTGAAACTTTCAAATATGACGTATTCAAAGATCAATGAGCCTGAGATGTTGCATTGTTCGTTTTGGTTCCATTCTATTGGAAGTTTTCTTTCTGTGGCATTACAAGTTTTTACCCCTCCACTATCTTGTGGACAATGTAAGGTTCACTGTTTGAAAATTTTTCTCACTCTGGGTTGTCAACATGGCAAGGTTTTACTGGATACAATACAATATGGGAACAAAAATTTGAGGTCCATTATTCAAAAGTTTCTTATCGTGGTTGTCAACATTACGAGTTCTCGTCCCCGAATGATACTCATCAAAAGTTTTTATTCCTGGACATTTTCATCTTCGTCCCGAAGGAAATTTATCCATTTTCTGCACGATTGGTCGGACATTGAATTTGGCATTTCAAAAGGAGTCGACTTCATCGCCCTTTCCTTTGTGAACAGTGCAGATCCTGTCAAGCATCTAAAGAATTACCTTTTGACAAAATCAGCAAAATCCGTAAGGGTATTGGCTAAGATTGAAAGCTTGGAGTCCCTTCAAAATCTGGAAGAAATTATAGAGGCCTCTGATGGAATCATGGTGGCTCGAGGGGATCTTGGGGTCGAAATTCCACTCGAGCAGATACCAGTAGTGCAAGAGGAAATAACTACTGTCTGTAGGGATCTGAACAAACCAGTGATCATAGCTTCTCAACTTCTAGAGTCGATGGTTGCAGATGTTTCTGAGGCTGTCCGACAATATGCTGATGCATTGATGCTATCTGGGGAGTCTGCCATAGGATCATATGGACAGAAAGCGCTTTCGGTTCTACAGATGGCCAGCAGCCGAATGGAGTTATGGAGTCGTGAAGAAAATAGGAAAAATGTCCTTCCCCAGCATCAACTTGGGGTGTCATTGCATGATCGCATTGTAGAAGAAATTTGCAATTCTGCAGCTGAATTGGCTAACAGACTTTCAGTAGACGCCATATTTGTGCTCACGAATCAAGGACATATGGCATCTCTCCTTTCCCGCAACCGCCCAAGCCCGCCAATATTTGCATTAACCGATGATGATAGCACAAGAATGGCTTTGAATCTACAATGGGGAGTGTTTCCTCTGCGCATTGACCTCTCAGAAGACATTGAAGCAAACATCTCAAGAGGGATCGAGCTTGTGAAATCAAAGGGATTGGTGAAACAGGGGGATTTTGTGATGGTTGTCTCAGAGATCTCTCCAGCTCGAGCTGCATCAATGGCGTCCCAATCAATCCAGCTGAAAACCATTGTGTAG 2256 42.51 VNAMMIRARFNFIAKNPVLDVKRLGFGMPVIGRAVWFNQRRTKGRVGDGVKATMQVDLEDEERLKRLEGLEATLGLDVVAERELKEKGFLGMRKTKLVCTIGPACNAIEDLEKLALEGMNIARLNMCHNSREWHCDVIKKIKKLNEEKGFCISVMIDTEGSQIHVVDHGAPSSVKVEVNLKCYVSVLFATIEVIINLNSLVIIVQDGSIWLFTAEKFEGSRSFTVQASYEGFSEGIQAGDSIVIDGGMASFEVIEKIGNDLSCRCTDPGLFLPRAKCSFWRDGRLVVRNHESPTLSSKVGTSLLHVNTHTEKFIYDKYNWKFSLLRFRSSIMLKLSNMTYSKINEPEMLHCSFWFHSIGSFLSVALQVFTPPLSCGQCKVHCLKIFLTLGCQHGKVLLDTIQYGNKNLRSIIQKFLIVVVNITSSRPRMILIKSFYSWTFSSSSRRKFIHFLHDWSDIEFGISKGVDFIALSFVNSADPVKHLKNYLLTKSAKSVRVLAKIESLESLQNLEEIIEASDGIMVARGDLGVEIPLEQIPVVQEEITTVCRDLNKPVIIASQLLESMVADVSEAVRQYADALMLSGESAIGSYGQKALSVLQMASSRMELWSREENRKNVLPQHQLGVSLHDRIVEEICNSAAELANRLSVDAIFVLTNQGHMASLLSRNRPSPPIFALTDDDSTRMALNLQWGVFPLRIDLSEDIEANISRGIELVKSKGLVKQGDFVMVVSEISPARAASMASQSIQLKTIV 751
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19328922 19333284 + Lsi03G010040.1 Lsi03g01004 658754

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01004 751 Gene3D - 95 160 IPR040442 -
Lsi03g01004 751 Gene3D - 445 602 IPR040442 -
Lsi03g01004 751 Gene3D - 607 746 IPR036918 -
Lsi03g01004 751 ProSitePatterns Pyruvate kinase active site signature. 495 507 IPR018209 GO:0004743|GO:0006096
Lsi03g01004 751 Pfam Pyruvate kinase, barrel domain 454 603 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lsi03g01004 751 Pfam Pyruvate kinase, barrel domain 92 185 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lsi03g01004 751 SUPERFAMILY PK beta-barrel domain-like 201 278 IPR011037 -
Lsi03g01004 751 PANTHER PYRUVATE KINASE 453 750 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lsi03g01004 751 PANTHER PYRUVATE KINASE 36 298 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lsi03g01004 751 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 87 606 IPR015813 GO:0003824
Lsi03g01004 751 Gene3D - 161 278 IPR015806 GO:0004743|GO:0006096
Lsi03g01004 751 SUPERFAMILY PK C-terminal domain-like 629 732 IPR036918 -
Lsi03g01004 751 Pfam Pyruvate kinase, alpha/beta domain 633 733 IPR015795 -
Lsi03g01004 751 PANTHER PYRUVATE KINASE 36 298 - -
Lsi03g01004 751 PANTHER PYRUVATE KINASE 453 750 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01004 K00873 PK, pyk; pyruvate kinase [EC:2.7.1.40] - csv:101220786 533.872
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01004 Lsi-Chr3:19328922 Lsi09g01285 Lsi-Chr9:20707624 7.70E-67 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g773 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00959 Cam10g0982 Cec10g1013 . Clacu10g1004 Cmu10g1787 Cre10g1160 . . . . . . . . . . . . . . . . Sed13g0418 Cmo04g00460 Cmo16g00321 . . . . Cpe14g00251 Cpe01g00386 Bhi11g01099 Tan01g0602 Cmetu07g0067 . . Mch10g0406 . . . . . . . . Lsi03g01004 . . Cme07g02213
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012138 0 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g01004 Lsi_Chr03 FPKM 9.158975 9.977924 6.472683 4.841478 4.224037 4.054218 7.324382 5.684555 5.70522 6.506431