Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01008 ATGGCCGCTCTCTCAATTGCTTCAGATTCATGGCTCATCAGTCACAAGGAGAAGCCCTATACAAGCCGCACAATCGCCAAGCCTTTTGGTAAGATTCCACTAGGGCATAAAACCGACGGCTATTTCTTTACAATTTCCAGACCGATTACAGGATATCGCTTAAGATTCTCCGCCAGAGATGATTCGGAAAGTGAGCCGTCGTCTTCCTCGATCGCGGTGGTTTCTGACGAGAGGGGCGGCGGAAATGACAGGGAGAAGGCGGAACTGTCTGCCGGGGAAGATGAGAGTGAAGAGAGAGAGAAACAGCAAGAAATGGATTGGAAGACAGACGAGGAGTTCAAGAAGTTCATGGGAAATCCTTCGATCGAAGCTGCCATAAAGCTGGAGAAGAAGAGGGCGGATAGGAAGCTGAAGGAGCTTGATCGTGAAGGCGGTGATAATCCGATCCTGGGATTGTTCAAGAGAATTGCCCGGAATAATTTGGCAAAAGAGAAGGAGAGATTAGAGAAGGCTGAAGAGACTTTCAAGGCTCTTGATCTCAACAAGCTTAAGAGTTGCTTTGGATTCAATACATTTTTTGCAACCGATGTACGTAGATTTGGAGATGGAGGTATTTTCATTGGGAACTTGAGGAGACCCATTGAAGAGGTGATTCCACAGTTGGAGAAAAAGCTGTCGGAGGCAGCAGGAAGGGAGGTCTGTATGGTGCAACCCAAGGCAGAAATAGATCTCCAATTTGAGTCTACAAAGCTGAGTACTCCATTGGGGTATTTTAGTGCAATAACTTTATGCGTTGCGACTTTTGGGACTATTGCTTTGATGAGTGGCTTCTTCCTAAAACCTGGTGCTACCTTTGATGACTATATATCTAATGTTGTTCCCCTCTTTGGTGGCTTCATCTCTATCTTGGGAGTTTCAGAGATAGCAACGAGGGTAACAGCAGCTCGTTATGGCGTGAAGCTAAGCCCTTCTTTTCTCGTGCCTTCCAACTGGACGGGATGCTTAGGAGTGATGAATAACTATGAATCACTACTTCCAAACAAGAAAGCGCTTTTTGATATTCCAGTAGCACGTACGGCTTCTGCATATTTAACGTCGTTGGCGCTTGCAATCTCTGCTTTTGTGATTGATGGTGGTTTTAATGGCGGAGACAATGCATTGTACATTAGACCTCAATTCTTTTACAACAATCCGTTGCTTTCTTTTATCCAGTTTGTTATTGGACCTTACTCAGATGACCTTGGCAATGTACTGCCCTATGCAGTGGAAGGTGTTGGGGTCCCTGTGGATCCCCTTGCTTTTGCTGGCCTTTTAGGGATGGTAGTGACGTCTTTGAACTTGTTGCCGTGCGGGAGGCTCGAAGGAGGCCGCATTGTGCAAGCCATGTTTGGGAGAAGCACCGCTGCCCTACTGTCGTTTGCCACATCGCTTGTACTTGGTATCGGCGGATTGAGCGGGAGTGTCCTTTGTTTGGCATGGGGCTTGTTTGCAACTTTCTTTCGAGGTGGTGAAGAAGTCCCCGCAACAGACGAGATCACTCCCTTGGGAGATGACCGGTATGCTTGGGGCGTCGTCCTCGGCCTCATTTGCTTCCTTACTTTGTTCCCTAACGGCGGAGGCACGTTCTCAACTTCATTCTTCAGTGCACCATTTTTCAGGGGTGATTTATGA 1671 47.34 MAALSIASDSWLISHKEKPYTSRTIAKPFGKIPLGHKTDGYFFTISRPITGYRLRFSARDDSESEPSSSSIAVVSDERGGGNDREKAELSAGEDESEEREKQQEMDWKTDEEFKKFMGNPSIEAAIKLEKKRADRKLKELDREGGDNPILGLFKRIARNNLAKEKERLEKAEETFKALDLNKLKSCFGFNTFFATDVRRFGDGGIFIGNLRRPIEEVIPQLEKKLSEAAGREVCMVQPKAEIDLQFESTKLSTPLGYFSAITLCVATFGTIALMSGFFLKPGATFDDYISNVVPLFGGFISILGVSEIATRVTAARYGVKLSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVARTASAYLTSLALAISAFVIDGGFNGGDNALYIRPQFFYNNPLLSFIQFVIGPYSDDLGNVLPYAVEGVGVPVDPLAFAGLLGMVVTSLNLLPCGRLEGGRIVQAMFGRSTAALLSFATSLVLGIGGLSGSVLCLAWGLFATFFRGGEEVPATDEITPLGDDRYAWGVVLGLICFLTLFPNGGGTFSTSFFSAPFFRGDL 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19361234 19365789 - Lsi03G010080.1 Lsi03g01008 658758

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01008 556 MobiDBLite consensus disorder prediction 58 106 - -
Lsi03g01008 556 MobiDBLite consensus disorder prediction 78 106 - -
Lsi03g01008 556 PANTHER ZINC METALLOPROTEASE EGY1 45 554 IPR044838 -
Lsi03g01008 556 PANTHER ZINC METALLOPEPTIDASE EGY3, CHLOROPLASTIC-RELATED 45 554 - -
Lsi03g01008 556 Coils Coil 154 181 - -
Lsi03g01008 556 Coils Coil 123 143 - -
Lsi03g01008 556 CDD S2P-M50_like_2 261 499 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01008 K25380 EGY; zinc metalloprotease EGY, chloroplastic [EC:3.4.24.-] - csv:101220315 977.622
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01691 Lsi-Chr1:15526904 Lsi03g01008 Lsi-Chr3:19361234 7.53E-20 dispersed
Lsi03g01008 Lsi-Chr3:19361234 Lsi03g00314 Lsi-Chr3:3793941 2.04E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g766 Blo02g00919 . . . . . Bma05g00641 . . . . . . . . . . . . . . . . . Cla10g00963 Cam10g0986 Cec10g1017 . Clacu10g1008 Cmu10g1791 Cre10g1164 . . . Cone10ag1060 . . . . . . . . . Bpe05g00462 . . Sed07g1144 Cmo04g00464 . . . . . . Cpe01g00389 Bhi11g01104 Tan01g0607 Cmetu07g1105 . . Mch10g0410 . . . . . . . . Lsi03g01008 . . Cme07g02209
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009933 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g01008 Lsi_Chr03 FPKM 1.700157 1.442312 0.0 0.478546 0.0 0.0 0.0 0.0 0.190005 0.109986