Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi03g01014 | ATGGGCGCTCCGAAGCAGAAATGGACTAGTGAAGAAGAAGCAGCCCTGAAGGCTGGAGTTGTTAAGCATGGAGCAGGAAAGTGGCGAACGATACTTAAGGATCCGGAATTCAGCAGTGTACTGTATCTTCGTTCAAATGTTGATCTCAAGGACAAGTGGAGGAATATGAGTGTCATGGCTAATGGCTGGGGGTCCCGAGAGAAGGCCAGGTTGGCACTTAAGAGATTACATGCTCCTAAAAAAGATGAGAACACTGTGGCTCAAAGTGTTGCTGTCCAAAGTGAAGACGAATTGCCAGAAGCTAATTCTTGTCTCTGTGGACAGGTTCTTTGTAATTTTGTCTATCCTGTTTTGGAGTTTTTGGCACACGAGAGTAGTAAAGGAGAGCTTAATTTGAAGTTAGACAATCTTATAATTGAGGCAATTACTACCCTGAGGGAACCTGGTGGCTCTAATAAGACAAAGATTACCTCATATATAGAGGTAGTTATCCTTTCACTAAATAAAGAAATTGGACTTGTGTTGAAGCTCTTCCTTCAATTTCTCATCAATTCAAGGAGTGATGAGAAAATGAAGGGAGATGGTCGTTTGGATCAATATTGGGCACCTCCAGACTTCAAGAGGTTGTTATCATCAAAATTGAAGTTCTTAACAGCTAGTCGTAAACTGGTCAAGGTAACCAAATCTAATTTCATTGTTGATTTCTTGAAAGAAAAGAGGGGGAAAACTCCTTTATGTGTTTTGGAATGTCAAATTTTCCAAGATGATTATGTTAAACGAAAATATAGGCTTCCTCCAGTGGTGCCTTCAGAGAGAAGGAGCTCTATGTTATTGTTGGACGACCAGCAAAGAGCTTCTATAAGAGCTGACAAGGATGAAATGTGTATTCTTTCTAAAGCTCAAATTGATCTCGAATTAGCCAAGATGAGGACCATGACTTCCCAAGAGGCAGCGGCAGCTGCTGCTCGAGCAGTTGCAGAAGCAGAAGCAGCAATAGCAGAAGCTGAAGAGGCAGCAAGGGAAGCCGAGGCAGCTGAGGCTGATGCAGAAGCAGCCCAATCATTTGCAGAAGCCGCAATGAAGACACTGAAAGGAAGAAATCTCCCGAAGATGGTGAAACTCTATTATTATATTATTTATGCCGTTGACGTTGCATTAGTATTTACTTCTTTGTTTCTTAATTCCATTGGGTCTATGAGTCATTAA | 1206 | 41.71 | MGAPKQKWTSEEEAALKAGVVKHGAGKWRTILKDPEFSSVLYLRSNVDLKDKWRNMSVMANGWGSREKARLALKRLHAPKKDENTVAQSVAVQSEDELPEANSCLCGQVLCNFVYPVLEFLAHESSKGELNLKLDNLIIEAITTLREPGGSNKTKITSYIEVVILSLNKEIGLVLKLFLQFLINSRSDEKMKGDGRLDQYWAPPDFKRLLSSKLKFLTASRKLVKVTKSNFIVDFLKEKRGKTPLCVLECQIFQDDYVKRKYRLPPVVPSERRSSMLLLDDQQRASIRADKDEMCILSKAQIDLELAKMRTMTSQEAAAAAARAVAEAEAAIAEAEEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMVKLYYYIIYAVDVALVFTSLFLNSIGSMSH | 401 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 19524894 | 19531278 | + | Lsi03G010140.1 | Lsi03g01014 | 658764 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi03g01014 | 401 | Coils | Coil | 318 | 355 | - | - | |
Lsi03g01014 | 401 | PANTHER | TELOMERE REPEAT-BINDING FACTOR 1 | 1 | 371 | - | - | |
Lsi03g01014 | 401 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 1 | 33 | IPR017930 | - | |
Lsi03g01014 | 401 | Gene3D | - | 2 | 59 | - | - | |
Lsi03g01014 | 401 | PANTHER | SINGLE MYB HISTONE 4 | 1 | 371 | IPR044597 | GO:0003691 | |
Lsi03g01014 | 401 | SUPERFAMILY | Homeodomain-like | 2 | 70 | IPR009057 | - | |
Lsi03g01014 | 401 | SUPERFAMILY | Winged helix DNA-binding domain | 134 | 199 | IPR036390 | - | |
Lsi03g01014 | 401 | Pfam | Myb-like DNA-binding domain | 5 | 55 | IPR001005 | - | |
Lsi03g01014 | 401 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 130 | 266 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
Lsi03g01014 | 401 | ProSiteProfiles | Myb-like domain profile. | 5 | 57 | IPR001005 | - | |
Lsi03g01014 | 401 | SMART | sant | 4 | 59 | IPR001005 | - | |
Lsi03g01014 | 401 | CDD | SANT_TRF | 6 | 56 | - | - | |
Lsi03g01014 | 401 | SMART | h15plus2 | 128 | 229 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g00888 | Lsi-Chr1:7163430 | Lsi03g01014 | Lsi-Chr3:19524894 | 3.50E-45 | dispersed | |
Lsi01g00889 | Lsi-Chr1:7165905 | Lsi03g01014 | Lsi-Chr3:19524894 | 6.69E-12 | dispersed | |
Lsi03g01014 | Lsi-Chr3:19524894 | Lsi07g00592 | Lsi-Chr7:6285937 | 4.12E-26 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24991 | PF00249 | Myb_DNA-binding | 5.90E-08 | CL0123 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi03g01014 | K09422 | - | csv:101218411 | 378.252 |