Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01014 ATGGGCGCTCCGAAGCAGAAATGGACTAGTGAAGAAGAAGCAGCCCTGAAGGCTGGAGTTGTTAAGCATGGAGCAGGAAAGTGGCGAACGATACTTAAGGATCCGGAATTCAGCAGTGTACTGTATCTTCGTTCAAATGTTGATCTCAAGGACAAGTGGAGGAATATGAGTGTCATGGCTAATGGCTGGGGGTCCCGAGAGAAGGCCAGGTTGGCACTTAAGAGATTACATGCTCCTAAAAAAGATGAGAACACTGTGGCTCAAAGTGTTGCTGTCCAAAGTGAAGACGAATTGCCAGAAGCTAATTCTTGTCTCTGTGGACAGGTTCTTTGTAATTTTGTCTATCCTGTTTTGGAGTTTTTGGCACACGAGAGTAGTAAAGGAGAGCTTAATTTGAAGTTAGACAATCTTATAATTGAGGCAATTACTACCCTGAGGGAACCTGGTGGCTCTAATAAGACAAAGATTACCTCATATATAGAGGTAGTTATCCTTTCACTAAATAAAGAAATTGGACTTGTGTTGAAGCTCTTCCTTCAATTTCTCATCAATTCAAGGAGTGATGAGAAAATGAAGGGAGATGGTCGTTTGGATCAATATTGGGCACCTCCAGACTTCAAGAGGTTGTTATCATCAAAATTGAAGTTCTTAACAGCTAGTCGTAAACTGGTCAAGGTAACCAAATCTAATTTCATTGTTGATTTCTTGAAAGAAAAGAGGGGGAAAACTCCTTTATGTGTTTTGGAATGTCAAATTTTCCAAGATGATTATGTTAAACGAAAATATAGGCTTCCTCCAGTGGTGCCTTCAGAGAGAAGGAGCTCTATGTTATTGTTGGACGACCAGCAAAGAGCTTCTATAAGAGCTGACAAGGATGAAATGTGTATTCTTTCTAAAGCTCAAATTGATCTCGAATTAGCCAAGATGAGGACCATGACTTCCCAAGAGGCAGCGGCAGCTGCTGCTCGAGCAGTTGCAGAAGCAGAAGCAGCAATAGCAGAAGCTGAAGAGGCAGCAAGGGAAGCCGAGGCAGCTGAGGCTGATGCAGAAGCAGCCCAATCATTTGCAGAAGCCGCAATGAAGACACTGAAAGGAAGAAATCTCCCGAAGATGGTGAAACTCTATTATTATATTATTTATGCCGTTGACGTTGCATTAGTATTTACTTCTTTGTTTCTTAATTCCATTGGGTCTATGAGTCATTAA 1206 41.71 MGAPKQKWTSEEEAALKAGVVKHGAGKWRTILKDPEFSSVLYLRSNVDLKDKWRNMSVMANGWGSREKARLALKRLHAPKKDENTVAQSVAVQSEDELPEANSCLCGQVLCNFVYPVLEFLAHESSKGELNLKLDNLIIEAITTLREPGGSNKTKITSYIEVVILSLNKEIGLVLKLFLQFLINSRSDEKMKGDGRLDQYWAPPDFKRLLSSKLKFLTASRKLVKVTKSNFIVDFLKEKRGKTPLCVLECQIFQDDYVKRKYRLPPVVPSERRSSMLLLDDQQRASIRADKDEMCILSKAQIDLELAKMRTMTSQEAAAAAARAVAEAEAAIAEAEEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMVKLYYYIIYAVDVALVFTSLFLNSIGSMSH 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19524894 19531278 + Lsi03G010140.1 Lsi03g01014 658764

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01014 401 Coils Coil 318 355 - -
Lsi03g01014 401 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 371 - -
Lsi03g01014 401 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Lsi03g01014 401 Gene3D - 2 59 - -
Lsi03g01014 401 PANTHER SINGLE MYB HISTONE 4 1 371 IPR044597 GO:0003691
Lsi03g01014 401 SUPERFAMILY Homeodomain-like 2 70 IPR009057 -
Lsi03g01014 401 SUPERFAMILY Winged helix DNA-binding domain 134 199 IPR036390 -
Lsi03g01014 401 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Lsi03g01014 401 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 130 266 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lsi03g01014 401 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Lsi03g01014 401 SMART sant 4 59 IPR001005 -
Lsi03g01014 401 CDD SANT_TRF 6 56 - -
Lsi03g01014 401 SMART h15plus2 128 229 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01014 K09422 MYBP; transcription factor MYB, plant - csv:101218411 378.252
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00888 Lsi-Chr1:7163430 Lsi03g01014 Lsi-Chr3:19524894 3.50E-45 dispersed
Lsi01g00889 Lsi-Chr1:7165905 Lsi03g01014 Lsi-Chr3:19524894 6.69E-12 dispersed
Lsi03g01014 Lsi-Chr3:19524894 Lsi07g00592 Lsi-Chr7:6285937 4.12E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g722 . Blo03g00069 Bda06g01187 . Bpe07g00280 . . Bma12g00288 . . . . . . . . . . . . . . . . Cla10g00975 Cam10g0998 Cec10g1028 Cco10g0991 Clacu10g1019 Cmu10g1802 Cre10g1176 . . Cone8ag0167 Cone12ag0173 . . . . . . . . . . . . . Cmo04g00473 Cmo16g00332 . . . . Cpe14g00260 Cpe01g00396 Bhi11g01125 . . . . . . . . . . . . . Lsi03g01014 . . Cme07g02198
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi03g01014 . 1 372 Single Myb Histone (SMH) Gene Family AT1G49950 52.0 3.5e-66 248.8
Lsi01g00888 . 1 153 Single Myb Histone (SMH) Gene Family AT1G49950 55.1 3.4e-37 152.5
Lsi01g00888 . 1 149 Single Myb Histone (SMH) Gene Family AT5G67580 57.2 3.3e-40 162.5
Lsi01g00888 . 1 149 Single Myb Histone (SMH) Gene Family AT3G49850 54.0 4.4e-37 152.1
Lsi07g00592 . 1 271 Single Myb Histone (SMH) Gene Family AT1G17520 52.1 8.0e-68 254.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005794 2 4 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24991 PF00249 Myb_DNA-binding 5.90E-08 CL0123 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g01014 Lsi_Chr03 FPKM 1.133333 0.0 1.346033 1.594895 2.33296 2.594317 3.167886 2.278789 2.521519 2.603079