Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01014 ATGGGCGCTCCGAAGCAGAAATGGACTAGTGAAGAAGAAGCAGCCCTGAAGGCTGGAGTTGTTAAGCATGGAGCAGGAAAGTGGCGAACGATACTTAAGGATCCGGAATTCAGCAGTGTACTGTATCTTCGTTCAAATGTTGATCTCAAGGACAAGTGGAGGAATATGAGTGTCATGGCTAATGGCTGGGGGTCCCGAGAGAAGGCCAGGTTGGCACTTAAGAGATTACATGCTCCTAAAAAAGATGAGAACACTGTGGCTCAAAGTGTTGCTGTCCAAAGTGAAGACGAATTGCCAGAAGCTAATTCTTGTCTCTGTGGACAGGTTCTTTGTAATTTTGTCTATCCTGTTTTGGAGTTTTTGGCACACGAGAGTAGTAAAGGAGAGCTTAATTTGAAGTTAGACAATCTTATAATTGAGGCAATTACTACCCTGAGGGAACCTGGTGGCTCTAATAAGACAAAGATTACCTCATATATAGAGGTAGTTATCCTTTCACTAAATAAAGAAATTGGACTTGTGTTGAAGCTCTTCCTTCAATTTCTCATCAATTCAAGGAGTGATGAGAAAATGAAGGGAGATGGTCGTTTGGATCAATATTGGGCACCTCCAGACTTCAAGAGGTTGTTATCATCAAAATTGAAGTTCTTAACAGCTAGTCGTAAACTGGTCAAGGTAACCAAATCTAATTTCATTGTTGATTTCTTGAAAGAAAAGAGGGGGAAAACTCCTTTATGTGTTTTGGAATGTCAAATTTTCCAAGATGATTATGTTAAACGAAAATATAGGCTTCCTCCAGTGGTGCCTTCAGAGAGAAGGAGCTCTATGTTATTGTTGGACGACCAGCAAAGAGCTTCTATAAGAGCTGACAAGGATGAAATGTGTATTCTTTCTAAAGCTCAAATTGATCTCGAATTAGCCAAGATGAGGACCATGACTTCCCAAGAGGCAGCGGCAGCTGCTGCTCGAGCAGTTGCAGAAGCAGAAGCAGCAATAGCAGAAGCTGAAGAGGCAGCAAGGGAAGCCGAGGCAGCTGAGGCTGATGCAGAAGCAGCCCAATCATTTGCAGAAGCCGCAATGAAGACACTGAAAGGAAGAAATCTCCCGAAGATGGTGAAACTCTATTATTATATTATTTATGCCGTTGACGTTGCATTAGTATTTACTTCTTTGTTTCTTAATTCCATTGGGTCTATGAGTCATTAA 1206 41.71 MGAPKQKWTSEEEAALKAGVVKHGAGKWRTILKDPEFSSVLYLRSNVDLKDKWRNMSVMANGWGSREKARLALKRLHAPKKDENTVAQSVAVQSEDELPEANSCLCGQVLCNFVYPVLEFLAHESSKGELNLKLDNLIIEAITTLREPGGSNKTKITSYIEVVILSLNKEIGLVLKLFLQFLINSRSDEKMKGDGRLDQYWAPPDFKRLLSSKLKFLTASRKLVKVTKSNFIVDFLKEKRGKTPLCVLECQIFQDDYVKRKYRLPPVVPSERRSSMLLLDDQQRASIRADKDEMCILSKAQIDLELAKMRTMTSQEAAAAAARAVAEAEAAIAEAEEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMVKLYYYIIYAVDVALVFTSLFLNSIGSMSH 401
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 19524894 19531278 + Lsi03G010140.1 Lsi03g01014 658764
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01014 401 Coils Coil 318 355 - -
Lsi03g01014 401 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 371 - -
Lsi03g01014 401 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Lsi03g01014 401 Gene3D - 2 59 - -
Lsi03g01014 401 PANTHER SINGLE MYB HISTONE 4 1 371 IPR044597 GO:0003691
Lsi03g01014 401 SUPERFAMILY Homeodomain-like 2 70 IPR009057 -
Lsi03g01014 401 SUPERFAMILY Winged helix DNA-binding domain 134 199 IPR036390 -
Lsi03g01014 401 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Lsi03g01014 401 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 130 266 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lsi03g01014 401 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Lsi03g01014 401 SMART sant 4 59 IPR001005 -
Lsi03g01014 401 CDD SANT_TRF 6 56 - -
Lsi03g01014 401 SMART h15plus2 128 229 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00888 Lsi-Chr1:7163430 Lsi03g01014 Lsi-Chr3:19524894 3.50E-45 dispersed
Lsi01g00889 Lsi-Chr1:7165905 Lsi03g01014 Lsi-Chr3:19524894 6.69E-12 dispersed
Lsi03g01014 Lsi-Chr3:19524894 Lsi07g00592 Lsi-Chr7:6285937 4.12E-26 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24991 PF00249 Myb_DNA-binding 5.90E-08 CL0123 Lsi TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01014 K09422 - csv:101218411 378.252