Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01026 ATGAATAAAATTATGGAACCTATAGGAGCCATTTCAGAAAGAGAATGGATATCTCTTAGTGGAGCATATACTGCTGAGGAGTCTGATTTCATGGCTAATTTGCTCAACAATTATTGTCTTCCAAATGAGCTAAATTCAGATTTAAGCTTGGAAATTCCATCTGCTTATTGGGCTTCCAATGAAGAACCACCATCATTGACCATGGCAGCCATGGATGAACCTTCTTATTATTCTTCAGATGCTTCTGATTCTTCCAATATGTATGCCCTTCCACAAGCCAACAATAATAATCATCCTTACACCTTCACTGATTCTCAACCTCTTTGGTTGCCTAATAATGGTGCTTCTTTGTCCTTGGATTTCTCCATGGAGGATGTCGAGAATGCCGATTGCTTGGACGACGACAACGGTTTGAATATTCGTAAAACAAGGCAATGCAGGCTGCAACACTCCCCTGCTGACCCTGCTGACACACTTGTTGTTGTCAATGGGAAGAGTTCACAACCGAAAAGACGAGCTGAGGACGTGACAGTGGAAGAAACTATGAGGGAAGATAAAGTTGCACCGATGTCGTCGGTCGATAACAACTCGAGGAAACGATCCCAAAATTTGCTTGATGTCGAAAAGACGAAAAGGAATGTGAGGGCACGGAAGAGCTCGAAGATTGCTTCGGCTAGCTGCAATGAAGAGGAGCACATTGTTAGTCCAAATGGGCAATGCACAAGTAGTTTCAGCTCTGAGGATGACTGTAATGAGCCTCAAGAAATCAATGGTGGAATCACTTCTAGCTCAACCTCAAAAGGGTCTGCAACCCTGACCTCAAATGGAAGGCCAAGAGCCAAAAAGAAGAGAAAGAATCAACGAAAGGTTGAGAATCTTACAAGGCCTCGTCCCGAACGGCACGAAGGTAAGACCGATTCCACACGATCATATATCGAAACGATCCACGGTGTTGATATCAGTACAATGCTTGAAGAAGCTGTTCAATATGTGAAATTTTTGCAGCTTCAAATCAAGTTATTGAGCTCTGATGATTTATGGATGTATGCACCAATTGCTTACAATGGAATGGACATTGGACTTAACTTGAAGCTGATGAAGCAAGACAATGCATCACAATAG 1122 42.51 MNKIMEPIGAISEREWISLSGAYTAEESDFMANLLNNYCLPNELNSDLSLEIPSAYWASNEEPPSLTMAAMDEPSYYSSDASDSSNMYALPQANNNNHPYTFTDSQPLWLPNNGASLSLDFSMEDVENADCLDDDNGLNIRKTRQCRLQHSPADPADTLVVVNGKSSQPKRRAEDVTVEETMREDKVAPMSSVDNNSRKRSQNLLDVEKTKRNVRARKSSKIASASCNEEEHIVSPNGQCTSSFSSEDDCNEPQEINGGITSSSTSKGSATLTSNGRPRAKKKRKNQRKVENLTRPRPERHEGKTDSTRSYIETIHGVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMKQDNASQ 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19818463 19820417 - Lsi03G010260.1 Lsi03g01026 658776

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01026 373 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 370 - -
Lsi03g01026 373 PANTHER TRANSCRIPTION FACTOR BHLH84-LIKE 8 370 - -
Lsi03g01026 373 MobiDBLite consensus disorder prediction 291 308 - -
Lsi03g01026 373 MobiDBLite consensus disorder prediction 168 187 - -
Lsi03g01026 373 MobiDBLite consensus disorder prediction 164 308 - -
Lsi03g01026 373 MobiDBLite consensus disorder prediction 230 276 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01026 - - - mcha:111017743 467.618
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi03g00573 Lsi03g01026 CCT
Lsi03g01026 Lsi03g00573 ECH
Lsi03g00573 Lsi03g01026 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01026 Lsi-Chr3:19818463 Lsi04g01492 Lsi-Chr4:22609862 5.24E-25 dispersed
Lsi03g00573 Lsi-Chr3:7014859 Lsi03g01026 Lsi-Chr3:19818463 1.24E-34 wgd
Lsi03g01026 Lsi-Chr3:19818463 Lsi08g01523 Lsi-Chr8:23282865 2.07E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g698 . . . Bda08g00680 . . Bma05g00650 . . Cmo11g01419 . . . . . Cpe04g00326 Cpe15g00442 . . . . . . . Cla02g00679 Cam02g0712 Cec02g0725 Cco02g0747 Clacu02g0721 Cmu02g0719 Cre02g1031 Cone12ag1048 . . Cone10ag1041 Lsi03g00573 Csa07g00687 . Cme01g00118 . . . . . Bpe05g00472 . . Sed07g1264 . Cmo16g00342 Cma11g01701 Cma19g00554 Car11g01142 Car19g00413 Cpe14g00269 Cpe01g00404 Bhi11g01138 Tan01g0640 Cmetu07g1092 . Hepe07g0418 Mch10g0448 . . . . . . . . Lsi03g01026 . Chy01g00128 Cme07g02178
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000893 1 3 0 1 2 3 5 3 3 3 3 3 5 3 3 3 3 2 5 3 3 3 3 3 3 3 3 4 3 2 87
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g01026 Lsi_Chr03 FPKM 2.073116 1.704778 2.145931 3.164789 9.551748 9.574959 10.066936 0.719649 0.743257 0.43157