Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01027 ATGACAGCCGTCCCTCCTCCGGCTGCTGGCCGGGAGCTTTCAAATCCTCCCTCCGACGGCATTTCCAATCTCCGCTTCTCCAACCACAGTGATCACTTACTTGTTTCCTCTTGGGACAAGACTGTGCGCTTGTACGACGCCAGCGCCAACGTTCTCCGCGGTGAGTTCGTACACGGTGGTCCTGTCCTCGACTGTTGTTTCCACGACGATTCATCTGGATTCAGTGTCAGTGTTGACAACACCGTCAGGAGGCTTGTTTTCAACCATAATAAGGAGGACATATTAGGGAGGCATGATGCACCTGTGCGGTGCGTTGAGTATTCTTATGCGGCAGGGCAATTAATTACTGGCAGTTGGGATAAAACACTAAAGTGTTGGGATCCTAGAGGCGCAAGTGGGCAGGAACATACTCTCGTTGGAACATATCCTCAGCCTGAACGTGTTTACTCACTTTCTCTTGTGGGGAACCGTTTAGTTGTAGCAACTGCTGGAAGGCATGTTAATGTCTATGACTTGAGAAATATGTCTCAACCCGAGCAAAGGAGGGAATCCTCATTGAAATATCAGACTCGATGTGTGCGTTGTTATCCAAATGGAACAGGCTATGCTCTTAGTTCAGTTGAAGGACGAGTTGCTATGGAATTTTTCGATCCCTCAGAGGCTAGTCAAGCCAAAAAGTACGCATTCAAATGTCACAGAAAGTCAGAGGCTGGAAGGGACATAGTATATCCGGTCAATGCCATTGCATTCCATCCTATCTACGGTACTTTTGCAACTGGAGGTTGTGATGGCCCTCCATTGGTTTTCATGCTAGAGTTACTTGATGGTGGTTTAGAGCCAAGGTCCCGAGTGACTTGCAGATTGCGCCCTTAG 873 48.45 MTAVPPPAAGRELSNPPSDGISNLRFSNHSDHLLVSSWDKTVRLYDASANVLRGEFVHGGPVLDCCFHDDSSGFSVSVDNTVRRLVFNHNKEDILGRHDAPVRCVEYSYAAGQLITGSWDKTLKCWDPRGASGQEHTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDPSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGPPLVFMLELLDGGLEPRSRVTCRLRP 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19851329 19855375 + Lsi03G010270.1 Lsi03g01027 658777

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01027 290 Gene3D - 10 265 IPR015943 GO:0005515
Lsi03g01027 290 PANTHER MRNA EXPORT FACTOR AND BUB3 7 264 - -
Lsi03g01027 290 Pfam WD domain, G-beta repeat 19 46 IPR001680 GO:0005515
Lsi03g01027 290 Pfam WD domain, G-beta repeat 95 127 IPR001680 GO:0005515
Lsi03g01027 290 SUPERFAMILY WD40 repeat-like 16 265 IPR036322 GO:0005515
Lsi03g01027 290 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
Lsi03g01027 290 PANTHER MITOTIC CHECKPOINT PROTEIN BUB3.2 7 264 - -
Lsi03g01027 290 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Lsi03g01027 290 SMART WD40_4 135 171 IPR001680 GO:0005515
Lsi03g01027 290 SMART WD40_4 222 270 IPR001680 GO:0005515
Lsi03g01027 290 SMART WD40_4 6 46 IPR001680 GO:0005515
Lsi03g01027 290 SMART WD40_4 88 127 IPR001680 GO:0005515
Lsi03g01027 290 SMART WD40_4 49 86 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01027 K02180 BUB3; cell cycle arrest protein BUB3 - csv:101212434 550.436
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01761 Lsi-Chr2:23327415 Lsi03g01027 Lsi-Chr3:19851329 5.68E-28 dispersed
Lsi03g01027 Lsi-Chr3:19851329 Lsi08g00092 Lsi-Chr8:1862236 1.39E-28 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g696 Blo02g00931 . . Bda08g00679 . . Bma05g00651 . . . . . . . . . . . . . . . . . Cla10g00999 . . Cco10g1017 . . . Cone12ag1050 Cone8ag1082 . . . . . . . . . . . Bpe05g00473 . . Sed11g0819 Cmo04g00484 Cmo16g00343 . . . . Cpe14g00270 Cpe01g00405 Bhi11g01139 Tan01g0641 Cmetu09g1555 . Hepe07g0419 Mch10g0449 . . . . . . . . Lsi03g01027 . . Cme07g02177
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009995 1 1 1 2 1 0 2 1 0 1 1 0 2 1 1 2 0 2 2 0 1 1 1 1 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g01027 Lsi_Chr03 FPKM 15.487586 19.02466 2.749528 2.802118 14.728585 13.036849 14.769156 0.906211 0.71223 0.734333