Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01029 ATGAAGTTCATGAAACTTGGATCAAAACCTGATTGCTTTCAGAATGATGGGACCAATGTTAGGTATGTTGTGAGTGAATTAGCAACAGACATCACTGTTATCGTTGGGGATGTCAAGTTTTACCTCCACAAGTTTCCCCTTCTGTCAAAGAGTGCTCACTTGCAGAAGTTGGTCACCGCTGCCACTGGGGAGCACAATGATGAAATATATATACCAGAGATCCCGGGCGGTTCTGCGGCATTTGAGATATGTGCCAAATTCTGTTACGGCATGACCGTTACTCTTAATGCCTATAACGTAGTTGCAGCCCGTTGTGCTGCTGAATACCTAGGAATGCATGAGACAATTGAAAAGGGAAACCTCACCTACAAAATCGATGTTTTCCTTAGCTCGAGCATCTTTCGTAGCTGGAAGGATTCAATCATTGTTCTTCAGTCGACCAAGGCATTAATGCCATTATCAGAGGAGCTGAAATTAGTAAGCAATTGCTTAGAATCTATTGCTGTGAAGGCCTCTGCTGATATTTCTAAAGTTGACTGGTCTTACACATATAACCGTAAGAAACTACCTGAGGAGAATGGGAACAATCCCAACTGGAATGGCGTCAGGAATCGTAGTGTGCCGAAGGACTGGTGGGTTGAGGATCTCTGTGAGCTAGAAATTGATGTATATAAGCGTGTTATAGCGAGTATAAAAAACAAAGGAATAGTCCCTAATGATGTGATTGGAGAAGCCTTGAAGGCTTATGCTTACCATTATCTTCCAGGCTTTAGCAAAGGTGTGCTTCAATGTGTGGATCTGCTGAAGTATCAGTCGGCAGTGTCGACAATTCTCTGGCTGTTACCTGCTGAGAAAGGCAGTGTTTCCAGTAGTTTCTTGTCCAAATTACTGAAAGCTTCCATTTTCCTAGCTTCTGGAGACGAGACCAAAGAAGAGCTCGTTCGACGAATGGGACAGCAGCTAGAGGAGGCTTCGGTGAGCGATCTTTTGCTGCGAGCACCGGAAGGTGAAGCTACGACTTATGATGTTAATGCTGTACAGAAAATGGTGGAGGTGTTTCTGTTGCAAGATCATAATAGTGAAATCGAGTCACTTGAAGAGGGAAATGAGGTTCAGGAGCCAAGAGGGCCAGGGATTTTATCAGATGCTACTAAGTTGATGGTGGCAAAATTGATCGATGGTTACCTTGCTGAAGTTGCAAAGGATCCCAACCTACCATCAGTAAAGTTCATTGATCTTGCAGAAATGGTATCTGGCATTGCTCGGCCTTCACATGATGGGCTCTATCGAGCCATAGACATGTATCTGAAGGAACATCCAGGGATTGGCAAGAGTGATAAGAAGAGAATCTGCAAACTGGTAGACTGCAAAAGACTATCTGCCGATGCGTGCATTCATGCTGTACAAAATGAACGGCTCCCTCTACGTATGGTTGTGCAGGTATTATTTTTTGAGCAAGTGAGGGCCTCAGCATCATCAGGCAGCAGCACTCCCGACCTACCTAAAGGCATCAAGGATCTAACGAGTGGGTCTCACAGCAGCTCAAGATCAGCCACGACGAACCCTGAGGAAGATTGGGATGCAGTTGCCATGGCTGAGGAGCTGAAGGCCCTCAAAGGGGAGCTAGCTTCCTTAAGGCTTGCTAATGGTAAAGGAAGTAGTGAGAGGAATGGAGATGGTAAAAATGGAATTGACAAAGCAGCTCTTAGTAAAATGAAAGGATTGCTCAAGTCAAAGAAGCTTTTCACAAAGCTATGGTCAAACAAAGGAGGAGGATACGGCGAAAACAGCGGTTCGGATTCATCGGAGAGCCTCGGTTCTGCAAATCAGGAGGAAATTAAGTCAACACCTTCCAGGAACAGAAGGCATTCAGTTTCTTAG 1881 44.92 MKFMKLGSKPDCFQNDGTNVRYVVSELATDITVIVGDVKFYLHKFPLLSKSAHLQKLVTAATGEHNDEIYIPEIPGGSAAFEICAKFCYGMTVTLNAYNVVAARCAAEYLGMHETIEKGNLTYKIDVFLSSSIFRSWKDSIIVLQSTKALMPLSEELKLVSNCLESIAVKASADISKVDWSYTYNRKKLPEENGNNPNWNGVRNRSVPKDWWVEDLCELEIDVYKRVIASIKNKGIVPNDVIGEALKAYAYHYLPGFSKGVLQCVDLLKYQSAVSTILWLLPAEKGSVSSSFLSKLLKASIFLASGDETKEELVRRMGQQLEEASVSDLLLRAPEGEATTYDVNAVQKMVEVFLLQDHNSEIESLEEGNEVQEPRGPGILSDATKLMVAKLIDGYLAEVAKDPNLPSVKFIDLAEMVSGIARPSHDGLYRAIDMYLKEHPGIGKSDKKRICKLVDCKRLSADACIHAVQNERLPLRMVVQVLFFEQVRASASSGSSTPDLPKGIKDLTSGSHSSSRSATTNPEEDWDAVAMAEELKALKGELASLRLANGKGSSERNGDGKNGIDKAALSKMKGLLKSKKLFTKLWSNKGGGYGENSGSDSSESLGSANQEEIKSTPSRNRRHSVS 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19861510 19866651 + Lsi03G010290.1 Lsi03g01029 658779

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01029 626 ProSiteProfiles NPH3 domain profile. 210 488 IPR027356 -
Lsi03g01029 626 Coils Coil 528 548 - -
Lsi03g01029 626 Gene3D Potassium Channel Kv1.1; Chain A 19 120 IPR011333 -
Lsi03g01029 626 SUPERFAMILY POZ domain 22 117 IPR011333 -
Lsi03g01029 626 MobiDBLite consensus disorder prediction 507 522 - -
Lsi03g01029 626 CDD BTB_POZ_NPY3-like 20 124 - -
Lsi03g01029 626 MobiDBLite consensus disorder prediction 590 614 - -
Lsi03g01029 626 MobiDBLite consensus disorder prediction 587 626 - -
Lsi03g01029 626 MobiDBLite consensus disorder prediction 491 524 - -
Lsi03g01029 626 Pfam NPH3 family 210 464 IPR027356 -
Lsi03g01029 626 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN NPY2 1 623 IPR029960 GO:0009958
Lsi03g01029 626 PANTHER OS12G0117600 PROTEIN 1 623 IPR043454 -
Lsi03g01029 626 Pfam BTB/POZ domain 28 117 IPR000210 GO:0005515
Lsi03g01029 626 ProSiteProfiles BTB domain profile. 29 97 IPR000210 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01029 - - - csv:101210637 1134.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00904 Lsi-Chr1:7278376 Lsi03g01029 Lsi-Chr3:19861510 0 dispersed
Lsi03g01029 Lsi-Chr3:19861510 Lsi08g01250 Lsi-Chr8:20957339 0 dispersed
Lsi01g00510 Lsi-Chr1:4166285 Lsi03g01029 Lsi-Chr3:19861510 2.96E-121 transposed
Lsi01g00895 Lsi-Chr1:7205746 Lsi03g01029 Lsi-Chr3:19861510 1.26E-09 transposed
Lsi02g01183 Lsi-Chr2:14812819 Lsi03g01029 Lsi-Chr3:19861510 4.99E-73 transposed
Lsi02g02365 Lsi-Chr2:30295827 Lsi03g01029 Lsi-Chr3:19861510 2.43E-100 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g693 Blo02g00933 Blo03g00074 Bda06g01203 Bda08g00675 Bpe07g00274 . . Bma12g00281 . . . . . . . . . . . . . . . . Cla10g01000 Cam10g1022 Cec10g1053 Cco10g1018 Clacu10g1040 Cmu10g1824 Cre10g1197 . . Cone3ag1025 Cone10ag1040 . . . . . . . . . Bpe05g00475 . . . Cmo04g00485 Cmo16g00344 . . . . Cpe14g00271 Cpe01g00406 Bhi11g01141 . . . . Mch10g0450 . . . . . . . . Lsi03g01029 . . Cme07g02176
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001152 3 7 3 2 3 2 2 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 8 2 2 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g01029 Lsi_Chr03 FPKM 5.042659 4.453906 6.744779 7.706231 13.315982 14.160716 14.339107 4.672838 3.990898 4.984725