Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01031 ATGCCTGAGAATCCCATGGAAGCTCTCTTTCAAACTGCTCAAAAGATTTCAACTTCCATTCAGGCCCATCTCTCAAACCTTCTTTCCCAGTCGCCCCATCATTCACGCCCCAACCACAAACCTCTTTCTTCTTCATTTTCGTCATCCTATGCGACTCCGTCATACACTGACACCACTTATTTGCAATCTAGTGACATAATCCAAAAGTACCCAGATCACCCAACGAGGCAGCAGAAGAAGGACGTAAAAGAATTGATGGCAATATTATCTCGCATGTACCCTTGTGGAGAATGTGCAGACCACTTTAAAGAAGTTCTGAGAGCAAACCCTGTAGAGGCTGGATCTCATGCCGTGTTTTCCCGATGGCTATGCCGTGTACATAACGTTGTCAACAGAAGTCTCGGAAAACCAATATTCCCATGCGAACGTGTTGATGCAAGATGGGGCAAATTGGAGTGCGAGCAACGCGCTTGCGACGTGCTCGGAAGCTTGCCAAATTTTGGGGAAGAAGATAGACATTGA 522 46.36 MPENPMEALFQTAQKISTSIQAHLSNLLSQSPHHSRPNHKPLSSSFSSSYATPSYTDTTYLQSSDIIQKYPDHPTRQQKKDVKELMAILSRMYPCGECADHFKEVLRANPVEAGSHAVFSRWLCRVHNVVNRSLGKPIFPCERVDARWGKLECEQRACDVLGSLPNFGEEDRH 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19879320 19882558 - Lsi03G010310.1 Lsi03g01031 658781

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01031 173 Pfam Erv1 / Alr family 68 148 IPR017905 GO:0016972
Lsi03g01031 173 Gene3D ERV/ALR sulfhydryl oxidase domain 63 160 IPR036774 GO:0016972
Lsi03g01031 173 SUPERFAMILY FAD-dependent thiol oxidase 68 149 IPR036774 GO:0016972
Lsi03g01031 173 PANTHER ALR/ERV 5 161 IPR039799 GO:0016971
Lsi03g01031 173 ProSiteProfiles ERV/ALR sulfhydryl oxidase domain profile. 48 148 IPR017905 GO:0016972
Lsi03g01031 173 MobiDBLite consensus disorder prediction 29 49 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01031 K17783 ERV1, GFER, ALR; mitochondrial FAD-linked sulfhydryl oxidase [EC:1.8.3.2] - csv:101217237 303.523
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g687 . Blo03g00077 Bda06g01206 . Bpe07g00271 . . Bma12g00279 . . . . . . . . . . . . . . . . Cla10g01003 Cam10g1026 Cec10g1057 Cco10g1021 Clacu10g1043 Cmu10g1827 Cre10g1200 . . . . . . . . . . . . . . . . Sed13g0451 Cmo04g00488 . . . . . . Cpe01g00408 Bhi11g01145 Tan01g0645 Cmetu07g2075 . Hepe07g0423 Mch10g0453 . . . . . . . . Lsi03g01031 . . Cme07g02173
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009809 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g01031 Lsi_Chr03 FPKM 17.646259 17.741018 10.832738 11.474348 5.908062 4.851202 5.995437 11.80464 12.612984 14.898903