Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01032 AACATCTTTAACTTACGATTCTTCATTCACAAGACGGCGCAATTTCATCCATCATTCTTCCCAAAATTAGGTCAAACTTCCATCAATTCTTTTATTTCTTGCCCTTTCAGTCTGTCCGTTTGTTGGTGGAGGATTTCTGAGGGCTTTATCTCAAATTCAGCCGTTGCTGAAATTTCGGCTCTGAAAATGATTCCCAGGAAAGACAGTTCTCGTATAGACACTTCTGAGCTGAAAGCGATGATCTATCGTAAGCTTGGACATCAGAGGTCTGAGAAATACTTTGATAACCTCAAGAAATTGTTGAGTTTAAAGATTAACAAAAGGGAATTCGACAAGTTTTGCATTCAGATTATTGGGAGGGAGATCATACCTCTTCATAATCGGCTTATCAAAGCAATTCTTCAAAATGCATGTGTGGCTAAAACTCCCCCTGTTCTTAGCAGTACAAGGAAAGTAGGAGGCAATCTCAGTGTAAAGGTTGTGAATGGATATCAGAGGAGTTGTCTTCAATCGCTTCATGGGGATACATTCCTTTCTTCTCCCCGAAAGGGTAGGTCTCCGGTTAGTAGAGACCGTAAGATTCGAGATCGTCCAAGTCCTTTGGGACCTTCTGGGAAGCCACATAATATGGCACTTGAAGAATTTGCTTTCAAGGCACAAGAACAGCAAAGTGCAACAGAGTTGCATTCTCTTGGCAGCCGTCCTCCTGTCGAAATGGCGTCCGTAGAAGATGGAGAAGAGGTTGAGCAGGTGGCTGGAAGTCCAGGAGTTCAAAGCAGAAGCCCAGTTACTGCTCCGCTTGGTATATCCATGAACTTCGTTGGTTCTGGTAAAACTCTCTCTAATGTTCCTGTAGGAAGAAATTACCATGTAACAACATGTCAAGATGGTGGTGAGCTACCCGACACAAGGTTGCTAAGAACTCATTTGAAGCAGAAGTTGGAAACGGAGCAGATCGATATATCTGTAGATGGTGTGAACCTTCTTAACAATGCACTGGATGTTTATTTAAAGAGGTTAATCGAGCCATGTTTGAATTTCTCTCGGTCAAGGTGCGAGCGACTGAAATTTACAGGCAATCAACCAATAACTGGCTCAAGAATCGCATTCCAGGAACAACATTGGCATCAAGCTCAACATTTGAATAATGCATCCTTGTTGGACTTTCGTGTCGCAATGCAACTGAATCCTGAAGTACTTGGGAGAGACTGGACGATGCAGCTTGAGAAAATCAGTTTACGAGCTTCCGAAGAG 1254 42.82 NIFNLRFFIHKTAQFHPSFFPKLGQTSINSFISCPFSLSVCWWRISEGFISNSAVAEISALKMIPRKDSSRIDTSELKAMIYRKLGHQRSEKYFDNLKKLLSLKINKREFDKFCIQIIGREIIPLHNRLIKAILQNACVAKTPPVLSSTRKVGGNLSVKVVNGYQRSCLQSLHGDTFLSSPRKGRSPVSRDRKIRDRPSPLGPSGKPHNMALEEFAFKAQEQQSATELHSLGSRPPVEMASVEDGEEVEQVAGSPGVQSRSPVTAPLGISMNFVGSGKTLSNVPVGRNYHVTTCQDGGELPDTRLLRTHLKQKLETEQIDISVDGVNLLNNALDVYLKRLIEPCLNFSRSRCERLKFTGNQPITGSRIAFQEQHWHQAQHLNNASLLDFRVAMQLNPEVLGRDWTMQLEKISLRASEE 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19886097 19887676 + Lsi03G010320.1 Lsi03g01032 658782

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01032 418 Pfam Transcriptional regulator of RNA polII, SAGA, subunit 69 346 IPR024738 GO:0070461
Lsi03g01032 418 PANTHER TRANSCRIPTIONAL REGULATOR OF RNA POLII, SAGA, SUBUNIT 66 418 - -
Lsi03g01032 418 MobiDBLite consensus disorder prediction 175 208 - -
Lsi03g01032 418 MobiDBLite consensus disorder prediction 223 245 - -
Lsi03g01032 418 MobiDBLite consensus disorder prediction 185 199 - -
Lsi03g01032 418 PANTHER TRANSCRIPTIONAL ADAPTER 1 66 418 IPR024738 GO:0070461
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01032 - - - csv:101211126 662.529
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01032 Lsi-Chr3:19886097 Lsi08g01129 Lsi-Chr8:19929935 3.25E-43 dispersed
Lsi03g01032 Lsi-Chr3:19886097 Lsi04g02193 Lsi-Chr4:28981800 6.42E-57 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g685 . Blo03g00078 Bda06g01207 . Bpe07g00270 . . . . . . . . . . . . . . . . . . . Cla10g01004 Cam10g1027 Cec10g1058 Cco10g1022 Clacu10g1044 Cmu10g1828 Cre10g1201 . . . Cone10ag1038 . . . . . . . . . . . . Sed07g1270 . Cmo16g00347 . . . . Cpe14g00272 Cpe01g00409 Bhi11g01148 Tan01g0647 Cmetu07g2285 . Hepe07g0424 Mch10g0454 . . . . . . . . Lsi03g01032 . . Cme07g02172
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007125 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g01032 Lsi_Chr03 FPKM 0.288591 0.624615 0.103129 0.07262 0.50749 0.12654 0.322319 0.079875 0.067692 0.0