Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01034 ATGGCGACTCTAAACCCTAAAAAGATGATCGGCGCCTTGCGGAGAAGCTCTGGGATTTCTGGGTTGTTGCATTTTCGCCATTTTTCTCAGTTGAAAAGTTCTAAGGCTTTCGAAGCTACTGTGATCGTGAGGAAGCAAGCTCAACCCATTCGGCCGTACTTCCGTTTGCCGGATTCTTTCAGGAAGACGAAGGAGGTTGGTGTTTTTCCCTCGGTGCAGCACTCGTCTGTGTCATCGGTTTTTTCGATTGTGAAGGTTGAGTTTCTTGAATGGTATTTGGCGATGGTTAAATGTCGTCCTGTTCTTACCAAGAGTATCACTTCTGCGCTTATTTACACGGCTGCTGATTTGTCGTCTCAGGTGAATACTAGTTTGGGAAGCAAATTTTCTTGGAAGAGTTGTTTTCTCTTTAATTTGATTGTTCTTAATGATCGCCCTTTTGAATACTGTTCTGATTTGGGAATCAAATTTTTGTGTATGAATGCTGCTCTGTTCTTGGGTGTTCTTTGTTGGGGGTTTGTTGATAATGAGGGTCCTCATTTAGGCAGTTTTAAAGCGAAGTTTTCTTTGAAGAGTCTTATTTTCTCTATTTTTGGATTGTTCATCATTGCAATTTTATCTTGTTTAGTGTTTACTACTATCAAACCTCTGCTCTCATTAGAGATTACCATTTCTCTGTCATCTTCAGAGCCATATGATTTAATTCGAACACTACGCATGGCTGGATATGGTATGTTGATTCTAGGGCCATCTCTCCATTACTGGTTCAACTTAATGTCAAAACTCTTCCCTCATAAAGATCTCTTCTCCACCTTCAAGAAAATGGCCATGGGGCAAAGTCTCTTTGGGCCTTCCATGACAGTCGTTTTCTTCTCCATGAATGCATTTCTCCAAGGTACAAGCTATTTTTCACAACCTGCTTCAGGTCTTAAACTTGAGATGACTGAGAACGGTGAAAATGGTGCTGAAATTATTGCCCGATTGAAACGAGACTTGCTTCCTACCATGCTCAATGGCGTTATGTACTGGCCAGTTTGCGATTTCATCACTTTTAGATTTGTCCCTGTTCATCTTCAAGCGTTGGTGAGCAATTCTTTCTCGTATGTGTGGACAGTTTACATGACATACATGGCGAGCCTTGAGAAGGCCGCCTCATGA 1158 41.71 MATLNPKKMIGALRRSSGISGLLHFRHFSQLKSSKAFEATVIVRKQAQPIRPYFRLPDSFRKTKEVGVFPSVQHSSVSSVFSIVKVEFLEWYLAMVKCRPVLTKSITSALIYTAADLSSQVNTSLGSKFSWKSCFLFNLIVLNDRPFEYCSDLGIKFLCMNAALFLGVLCWGFVDNEGPHLGSFKAKFSLKSLIFSIFGLFIIAILSCLVFTTIKPLLSLEITISLSSSEPYDLIRTLRMAGYGMLILGPSLHYWFNLMSKLFPHKDLFSTFKKMAMGQSLFGPSMTVVFFSMNAFLQGTSYFSQPASGLKLEMTENGENGAEIIARLKRDLLPTMLNGVMYWPVCDFITFRFVPVHLQALVSNSFSYVWTVYMTYMASLEKAAS 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19888329 19889966 - Lsi03G010340.1 Lsi03g01034 658784

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01034 385 Pfam Mpv17 / PMP22 family 318 374 IPR007248 GO:0016021
Lsi03g01034 385 PANTHER PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17 13 124 IPR007248 GO:0016021
Lsi03g01034 385 PANTHER OS12G0508100 PROTEIN 13 124 - -
Lsi03g01034 385 PANTHER OS12G0508100 PROTEIN 207 384 - -
Lsi03g01034 385 PANTHER PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17 207 384 IPR007248 GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01034 K13348 MPV17; protein Mpv17 - csv:101210878 265.003
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01034 Lsi-Chr3:19888329 Lsi03g01642 Lsi-Chr3:27602481 5.36E-11 dispersed
Lsi11g00259 Lsi-Chr11:2616532 Lsi03g01034 Lsi-Chr3:19888329 2.26E-10 transposed
Lsi11g01659 Lsi-Chr11:24879049 Lsi03g01034 Lsi-Chr3:19888329 1.06E-12 transposed
Lsi03g01034 Lsi-Chr3:19888329 Lsi08g01517 Lsi-Chr8:23244871 9.55E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g684 Blo02g00937 . Bda06g01208 . Bpe07g00269 . Bma05g00660 Bma12g00278 . . . . . . . . . . . . . . . . Cla10g01005 Cam10g1028 Cec10g1059 Cco10g1023 Clacu10g1045 Cmu10g1829 Cre10g1202 . . Cone3ag1021 Cone10ag1037 . . . . . . . . . Bpe05g00480 . . Sed02g0787 Cmo04g00489 . . . . . . Cpe01g00410 Bhi11g01149 Tan01g0648 Cmetu04g2145 . Hepe07g0425 Mch10g0455 . . . . . . . . Lsi03g01034 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001548 1 2 1 3 3 2 3 2 2 2 2 2 3 2 2 4 2 2 3 2 2 2 2 2 2 2 2 2 7 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g01034 Lsi_Chr03 FPKM 33.308128 31.994875 36.808437 33.422855 25.251738 30.899088 25.902714 26.591038 27.263494 26.939718