Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01036 ATGCTATCTAGAATTCAATGTAAAGAAGCTGAGGAGCAAATGTACAGAGCTGAGAAAACTGCAGCTGAAGCTTTCAAAGCAGCTGCAGCTATGGGAGTGATCATGTATGATACACCCAATTGTCCACAGAAGACATACAAAATGGAAACTTCATCTTCTGGTGGTGGTGGATCTACAACTCACACCATTACAGCATCTTTTGAGACAGAATTTGAGGTTGATAAGGAAGTGGCTGCAGCAGTAAAAACAGCATTGGTTAGGCTTGCGAGTTGCTCTTCTTTAAGAGAAGATGAATTTAAAGAACTCTTACGAAAAATCTCTCAGAACCCAGATTCTGATACTAATGTAGGCCCATCTGAGATTTCTTCTGAATGTGAATCAGAGAATGGCTTAGAACTTGATCAAGCACCTCGAAAGTCTGATTTCAGCTCTCACAATTTGGATTGCAAGATGTTGGATTTACATATGAGACAGAAAACTTTTGAGAAGGAGACTAAGATTGAGGACTTGATGTATGAAAGGCTTAGGCGTTTGAGAGAAGATGAACTTTCCTCTCTTGCCACCATAGTTGCAACTTGTGGTTTAAATGCTGTCTTGGCTGAGGTAGAAAGTGGGAAGCTTCATGATTTTCACAATGGAAGGAAACAAGTTGAGTCAGAACTTCCCAGCCTAGATAAATTCTTGGTAAAACATGTAACTAAATTGGAAAGAGAAGTGCTTGAAGCAAAGAACAACAGAAAGAACAAAGAAAAGGAATTAGCCTCGAATAATTCTGAAATGACAACTATCAAAGAGAAGATCGACTTAGATAATTCTACATCACAAAACATTCTAAAGTCGAGCAGTATTCATGATGAGAAAGTTGTTTCCAGTTTGGAAACTATGCAAACAAAGCTACCTTCAGAGCTTGAGAAGGAAGTTAAAGGGACTAAAGTCCAAGGGGTAGAAGAATTCAAGACCTGTAGCAAGAAGTTGCAGGCAAGGCAAAGATTTGTTAGTCGTAAAGAAGTTGTTTCAGCAGTTCCGAGTCTCGATAAGTATCTTGTGAAACATGTCTCACGGCTTGAAAAAGAAGTACATGAAGCGAAAAACAGAAGAAAAGTTGAGCTGCATGAAGAATCCTTGAAGGAAACAGAGGGAAAGGAAAATGTTAATATGCCAAAGTCTTCATTGAAGATGGGAAGGGACATGGAAGACAGCCTAGATAAGATCTTAGTGAAGCCAGTGCACAGGCTGGAAAGGGAAAAGATGTCGGTCGTGTTAGCTGAAAGTAACTATAATAAACAAAGACAAAACAAGAAACAGGTGGATAACCACAAATCAGATTGCCAAAGCTTGGATGAAATTTTAGTAAAGCATGTCTCAAGACTGGAGAAAGAGAAAATGAGAAGCAAAGTAGAGAACCTAAAGAGAAGTGAAAAAAATATGAATTCAGTGATCAATGGAGGAGGATATGGTGGGGGTTTAGGTGAGATTCTGGTTAAACATAAATCAAGACTTGAGAGAGAAAAGCTGATGTCTTCTCAAGAGCTGCCTGGATCAAAGCTGAAGAGGAGGAAAGGAAGCAAGTTATGA 1575 39.11 MLSRIQCKEAEEQMYRAEKTAAEAFKAAAAMGVIMYDTPNCPQKTYKMETSSSGGGGSTTHTITASFETEFEVDKEVAAAVKTALVRLASCSSLREDEFKELLRKISQNPDSDTNVGPSEISSECESENGLELDQAPRKSDFSSHNLDCKMLDLHMRQKTFEKETKIEDLMYERLRRLREDELSSLATIVATCGLNAVLAEVESGKLHDFHNGRKQVESELPSLDKFLVKHVTKLEREVLEAKNNRKNKEKELASNNSEMTTIKEKIDLDNSTSQNILKSSSIHDEKVVSSLETMQTKLPSELEKEVKGTKVQGVEEFKTCSKKLQARQRFVSRKEVVSAVPSLDKYLVKHVSRLEKEVHEAKNRRKVELHEESLKETEGKENVNMPKSSLKMGRDMEDSLDKILVKPVHRLEREKMSVVLAESNYNKQRQNKKQVDNHKSDCQSLDEILVKHVSRLEKEKMRSKVENLKRSEKNMNSVINGGGYGGGLGEILVKHKSRLEREKLMSSQELPGSKLKRRKGSKL 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19910419 19912616 - Lsi03G010360.1 Lsi03g01036 658786

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01036 524 Coils Coil 7 27 - -
Lsi03g01036 524 MobiDBLite consensus disorder prediction 503 517 - -
Lsi03g01036 524 MobiDBLite consensus disorder prediction 366 393 - -
Lsi03g01036 524 Coils Coil 232 266 - -
Lsi03g01036 524 MobiDBLite consensus disorder prediction 366 383 - -
Lsi03g01036 524 MobiDBLite consensus disorder prediction 108 129 - -
Lsi03g01036 524 PANTHER MYOSIN-2 HEAVY CHAIN-LIKE PROTEIN 3 512 - -
Lsi03g01036 524 MobiDBLite consensus disorder prediction 503 524 - -
Lsi03g01036 524 Coils Coil 352 372 - -
Lsi03g01036 524 MobiDBLite consensus disorder prediction 105 142 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01036 - - - csv:101216997 681.019
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g681 Blo02g00938 . . Bda08g00672 . . . . . . . . . . . . . . . . . . . . Cla10g01008 Cam10g1031 Cec10g1062 Cco10g1026 Clacu10g1048 Cmu10g1832 Cre10g1204 . . Cone3ag1018 . . . . . . . . . . Bpe05g00481 . . . Cmo04g00492 Cmo16g00350 . . . . Cpe14g00275 Cpe01g00412 Bhi11g01151 . . . . . . . . . . . . . Lsi03g01036 . . Cme07g02168
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006087 2 6 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g01036 Lsi_Chr03 FPKM 7.788288 8.294 9.801376 10.413901 11.332573 12.28384 12.318982 8.882062 8.151612 8.793139