Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01052 ATGGCTAATCGGATCTCCGGTGTTTCCCAACAAGTATCCGATGCCATTCCCGACATGTCGTCCTCCGACTCAATCGTAAAAGAAGAAGAAGAAGAAGTTGCTGCACCGTCGTCTGAGAGGAAACCGTCATGGCAAAAGCTCCGACGATATGACTCGTTGGATTTAGAGTCACGTAAACTCCATGGTGGTGATGATGATCATTCCTATGCCAAGGAGAAGAAATGGAGTGTAATCTTACACCTAGCGTTCCAAAGCATCGGGATAGTTTACGGCGACATCGGAACGTCACCGTTGTACGTGTTCTCGAGCACATTTTCGGATGGAATAAAGCACAACGACGATATTTTAGGGGCGTTATCGTTGATCATTTATACCATAACTTTGATTCCTGTAATCAAATACGTGTTTATCGTTTTGAGAGCAAACGACAACGGAGAAGGGGGAACGTTCGCATTGTACTCATTGATATGTCGATATGCGAAAGTGGGGTTGATTCCGAATGCGGAGAATGAGGATCGAGAAGTGTCGAATTACCAATTGAGTTTACCGAATGAAAGAGAGAAGAGAGCTTCGAGGATTCAATTGAAGTTGGAGAAAAGCCATTTTGCAAAAGTGTTTCTTCTATTTGCAACTATGCTTGGGACCTCCATGTGTTATCTGCTGTGGGAGGGATCAAGGAGGCTACCCCTGCAATGA 696 44.68 MANRISGVSQQVSDAIPDMSSSDSIVKEEEEEVAAPSSERKPSWQKLRRYDSLDLESRKLHGGDDDHSYAKEKKWSVILHLAFQSIGIVYGDIGTSPLYVFSSTFSDGIKHNDDILGALSLIIYTITLIPVIKYVFIVLRANDNGEGGTFALYSLICRYAKVGLIPNAENEDREVSNYQLSLPNEREKRASRIQLKLEKSHFAKVFLLFATMLGTSMCYLLWEGSRRLPLQ 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20254552 20255820 - Lsi03G010520.1 Lsi03g01052 658802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01052 231 Pfam K+ potassium transporter 82 219 IPR003855 GO:0015079|GO:0016020|GO:0071805
Lsi03g01052 231 MobiDBLite consensus disorder prediction 1 43 - -
Lsi03g01052 231 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 38 218 IPR003855 GO:0015079|GO:0016020|GO:0071805
Lsi03g01052 231 MobiDBLite consensus disorder prediction 1 20 - -
Lsi03g01052 231 PANTHER POTASSIUM TRANSPORTER 5 38 218 - -
Lsi03g01052 231 MobiDBLite consensus disorder prediction 23 43 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01052 Lsi-Chr3:20254552 Lsi02g02374 Lsi-Chr2:30419480 6.13E-68 dispersed
Lsi02g02375 Lsi-Chr2:30442129 Lsi03g01052 Lsi-Chr3:20254552 1.87E-77 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01052 K03549 - csv:101215797 350.903