Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01078 ATGGCATCATTCACTAAAGAAAACGTGGAAAGCAGACAAGCAATTTCTAGTATTATTGGGACTGGAAAATGTGAAAGCTACTTCATTTTTAGAATTGAAACTTCCCTTGGAGATGCATTTCGGATATTCCTATATTTTATGGGCCTTGCATATTGTTTCATTGGATTGTCAGCAATTACTGCTCGATTTTTCCGGTCCATGGAGAATGTTGTGAAGCACTCAAGGAAGGTGGTAGAGATAGATCCGCACACCAATACTGAAATTATTCGATATGAGAAGGTCTGGAACTTTACAATTGCAGATATCAGCTTACTGGCGTTTGGCACTAGCTTTCCTCAAATATCATTAGCTACTATTGATGCTATTCGAAATATTGGCAACCTGTATGCTGGAGGTTTATTCACTTCCTTTCCTCGCATAAGTTCTGAACTAGTATTATTTATTGCAGGTCTGGGACCTGGAACACTGGTTGGTTCTGCTGCTTTCGACCTTTTTCCCATTCATGCTGTTTGCGTTGTAGTGCCTAAGGCAGGGGAGTTGAAAAAAATATCTGATATAGGAGTTTGGCTAGTTGAGCTCGTTTGGTCTTTCTGGGCTTATATTTGGCTATACATTATTTTGGAGGTGTGGACGCCAAATGTAATAACTCTTTGGGAAGCTTTGTTGACTGTGCTACAGTATGGATTATTGCTTACACACGCTTACGCTCAAGATAAGCGATGGCCCTACTTGTCCCTTCCTTTGGAAAGAACTGAGAGGCCAGAGGAATGGGTGCCACCTGAGATTGCTATATGCGCACAGGATAATCCCTGTAGAGAGGAATTTCAAGCCCATGAGAATGAGCAGAGAAGCATTGTTGACATTTTCTCTATCCATGATAAAGATGAGAAAGATGTTCAAAAGCATCATGAGCTGTATCATGAAGTTCCTGGACATGATGTTGCTGAATCCTCCTGTAGTAATTTTCCGGAGGAGATGGATGGAAAGGCAGACCACCCTCATGTGCTTAAAATTTGGAAACAACAGTTTGTGGATGCACTTTCGTTGGGAACTTCGGAATCAAAGAAGATGAATAACATCTTTTTACGACTAGCAAGATTATGCTGGCAGCTGCTGCTTTTTCCATGGAGACTTTTGTTTGCTTTTGTACCTCCTTATCACATTGCTCATGGATGGCTTGCCTTTATTTGTTCTCTTATTTTCATCAGTGGGATAGCTTATGTCGTCACTAAGCTCACAGATCTAATAAGCTGTGTCTCAGGAATAAATCCTTATGTCATAGCATTTACAGCATTGGCAAGTGGAACTTCTTGGCCAGATTTAGTGGCTAGTAAGATTGCTGCTGAGCGCCAGACAACGGCAGACTCTGCCATTGCAAACATTACATGCAGCAATTCGGTGAACATCTACGTGGGAATTGGAGTTCCATGGGTGATAAGCACTGCATACAATTTCATAGCATATAGAGAACCACTAAAAATAAAGGATGCAGCAGGTCTTAGCTTCAGTTTGCTGGTATTTTTTTCAACTTCTGTGGCTTGCATTGCTGTGCTTGTGTTTAGGCGTCTAACATTAGGTGCAGAGCTTGGAGGGCCAAGGCTTTGGGCTTGGATTACATGCATCTTTTTCATGTTGCTTTGGCTCATCTTTGTGGTGCTCTCTTCTCTCAAGGTTTCAGATATCATCTGA 1689 41.56 MASFTKENVESRQAISSIIGTGKCESYFIFRIETSLGDAFRIFLYFMGLAYCFIGLSAITARFFRSMENVVKHSRKVVEIDPHTNTEIIRYEKVWNFTIADISLLAFGTSFPQISLATIDAIRNIGNLYAGGLFTSFPRISSELVLFIAGLGPGTLVGSAAFDLFPIHAVCVVVPKAGELKKISDIGVWLVELVWSFWAYIWLYIILEVWTPNVITLWEALLTVLQYGLLLTHAYAQDKRWPYLSLPLERTERPEEWVPPEIAICAQDNPCREEFQAHENEQRSIVDIFSIHDKDEKDVQKHHELYHEVPGHDVAESSCSNFPEEMDGKADHPHVLKIWKQQFVDALSLGTSESKKMNNIFLRLARLCWQLLLFPWRLLFAFVPPYHIAHGWLAFICSLIFISGIAYVVTKLTDLISCVSGINPYVIAFTALASGTSWPDLVASKIAAERQTTADSAIANITCSNSVNIYVGIGVPWVISTAYNFIAYREPLKIKDAAGLSFSLLVFFSTSVACIAVLVFRRLTLGAELGGPRLWAWITCIFFMLLWLIFVVLSSLKVSDII 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20631870 20637472 + Lsi03G010780.1 Lsi03g01078 658828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01078 562 PANTHER NA/CA-EXCHANGE PROTEIN, ISOFORM G 338 562 - -
Lsi03g01078 562 Pfam Sodium/calcium exchanger protein 45 235 IPR004837 GO:0016021|GO:0055085
Lsi03g01078 562 Pfam Sodium/calcium exchanger protein 390 554 IPR004837 GO:0016021|GO:0055085
Lsi03g01078 562 PANTHER NA/CA-EXCHANGE PROTEIN, ISOFORM G 5 241 - -
Lsi03g01078 562 PANTHER SODIUM/CALCIUM EXCHANGER 338 562 - -
Lsi03g01078 562 Gene3D - 97 253 IPR044880 -
Lsi03g01078 562 Gene3D - 346 556 IPR044880 -
Lsi03g01078 562 PANTHER SODIUM/CALCIUM EXCHANGER 5 241 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01078 K03452 - csv:101205540 980.704