Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01118 ATGTCGGTGCCTGCGGCTTCCGTCACCGCAGGTATATTGGAACAGGTTTCTTGCCGGTTTCCAAAACAGTTGATTTTATTGTGGTTTGTGATTTCTGTAACCAATGCCGATGTCCCCGACGTACCACCAGCACCTTTGGTTGCACCTACTACTCGCGATATGCCACTACCTGCGAAATTGCCTCTTCACCAACACCATCACCGAAAATATATGTCACCACAGAGTGCGCCAGAAGCTGGACTAGCACCGGCATCTCCTCCTTACTATGGGCATCTTATCACTTCTGGTCACCCACCCACAAGTTCAAATTTTTCCAAACCCTTGATGAAGAGCGGATCAGCTCCTCCTGATGGTAGGCTTGAAAACATTGCTCCCATACAGTCCAGTGCTGGTGCTATTCCCTCTGGCTTACCTCAGCCACCACTTTCTCCTATTGCAGCAGACTGTTGCAAACCTGACATGGTGCTGAAACGAGGAAGTGGTGATGACTGCCATTGTGTCTATCCCATAAAAATTGATCTCCTTCTCTTGAACGTATCACAGAATCCTAATTGGAAACTTTTTCTCGAAGAGTTAGCTTCTGAACTTGGTTTACGAGTCTCTCAGATTGAGCTGATAAACTTTTATGTACTTAGTTTATCGAGGTTAAATATCTCAATGGACATTACTCCCCACGCTGGGATCAGCTTTTCTGCGGTTGATGCATCTGCAATAAACTCTTCACTTACATTGCATAAAGTTCGTCTGGACCCTACACTGGTTGGCGATTACAGTCTTCTCAATATTACCTGGTTTAAGCCTCCAGCTCCTTCTCAAGCTCCTCTAGCTTCTGCATCACCTGTAGCAGCTCCAGCATATCGTTTTCCAGCCTCAACATCACTGAGTTCTCCTAGGAAAGGACACCATTCTAATCTGACACTTATTATTGGTATTGGCGCTGGTTTTTTGTTCGTTGCCATTCTATTTGTGTTGATAATTTGCATATGCACATCTCATCGTGCAAAGACTGAATCACCTCCACTAGTAACTGAAAAACCAAGGGTTGAGGACAAAGTACCTGTGGCAGGATCGTTCCCTCATCCATCAAGTATGAGATTTCTAACTTATGAAGAGCTTAAAGAAGCAACTAATAACTTTGAAGCAGCCAGCATACTGGGGGAGGGCGGTTTTGGCAGGGTTTTTAAGGGTGTCTTAAGTGACGGCACAGCTGTTGCAATCAAGAGGCTTACAAGTGGAGGGCAACAAGGTGACAAGGAATTTTTGGTTGAGGTTGAGATGCTTAGCCGGTTGCATCATCGAAACCTCGTTAAACTTGTTGGCTACTACTGTAATCGCGACTCTGCACAAAACCTGCTATGCTATGAACTTGTTCCGAATGGAAGCTTGGAGGCCTGGCTCCATGGTCCTTTGGGTGTTAATTGCCCTTTGGATTGGGATACCAGGATGAAGATTGCACTGGACGCTGCCCGAGGGCTTGCTTACCTTCATGAAGACTCACAACCATGTGTGATACACAGAGACTTTAAGGCGTCAAATATATTGCTCGAGAACAACTTCCATGCCAAAGTTGCAGACTTTGGTCTTGCTAAACAAGCTCCCGAAGGCAGGGCTAATTACCTTTCTACTCGTGTGATGGGCACATTTGGATACGTCGCCCCTGAATATGCAATGACTGGCCATCTACTTGTTAAAAGTGATGTTTATAGCTACGGAGTTGTACTTCTCGAGTTGCTCACCGGAAGGAAACCTGTAGATATGTCACAACCATCAGGACAGGAGAACCTGGTCACATGGGCAAGGCCGATTTTGAGAGACAAGGATCGCTTGGAAGAACTTGCTGATCCACGGCTTGGAGGAAAGTATCCGAAGGAAGATTTTGTGCGGGTGTGTACCATTGCTGCAGCCTGCGTCGCTCCTGAGGCTGGCCAACGTCCAACTATGGGCGAAGTTGTACAGTCTCTTAAAATGGTGCAGCGCGTTACAGAATACCAAGACTCCATGGTACCATCCTCCAACAACCGAACCAATCTTAGACAGTCGTCCACAACTTTCGAGTCCGATGGATCCTCTTCAATGTTCTCTTCTGGTCCTTATTCTGGTTTAAGTGCTTTTGACAATGACAATGTATCTCGGACAGCAATTTTCTCCGAAGATCTTCACGAGGGACGATGA 2172 46.22 MSVPAASVTAGILEQVSCRFPKQLILLWFVISVTNADVPDVPPAPLVAPTTRDMPLPAKLPLHQHHHRKYMSPQSAPEAGLAPASPPYYGHLITSGHPPTSSNFSKPLMKSGSAPPDGRLENIAPIQSSAGAIPSGLPQPPLSPIAADCCKPDMVLKRGSGDDCHCVYPIKIDLLLLNVSQNPNWKLFLEELASELGLRVSQIELINFYVLSLSRLNISMDITPHAGISFSAVDASAINSSLTLHKVRLDPTLVGDYSLLNITWFKPPAPSQAPLASASPVAAPAYRFPASTSLSSPRKGHHSNLTLIIGIGAGFLFVAILFVLIICICTSHRAKTESPPLVTEKPRVEDKVPVAGSFPHPSSMRFLTYEELKEATNNFEAASILGEGGFGRVFKGVLSDGTAVAIKRLTSGGQQGDKEFLVEVEMLSRLHHRNLVKLVGYYCNRDSAQNLLCYELVPNGSLEAWLHGPLGVNCPLDWDTRMKIALDAARGLAYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKQAPEGRANYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPSGQENLVTWARPILRDKDRLEELADPRLGGKYPKEDFVRVCTIAAACVAPEAGQRPTMGEVVQSLKMVQRVTEYQDSMVPSSNNRTNLRQSSTTFESDGSSSMFSSGPYSGLSAFDNDNVSRTAIFSEDLHEGR 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 21364216 21369874 - Lsi03G011180.1 Lsi03g01118 658868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01118 723 MobiDBLite consensus disorder prediction 664 705 - -
Lsi03g01118 723 MobiDBLite consensus disorder prediction 100 121 - -
Lsi03g01118 723 CDD STKc_IRAK 385 655 - -
Lsi03g01118 723 ProSitePatterns Serine/Threonine protein kinases active-site signature. 503 515 IPR008271 GO:0004672|GO:0006468
Lsi03g01118 723 ProSitePatterns Protein kinases ATP-binding region signature. 385 407 IPR017441 GO:0005524
Lsi03g01118 723 Gene3D Transferase(Phosphotransferase) domain 1 457 679 - -
Lsi03g01118 723 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ALE2 23 723 - -
Lsi03g01118 723 Gene3D Phosphorylase Kinase; domain 1 360 456 - -
Lsi03g01118 723 Pfam Protein tyrosine and serine/threonine kinase 382 654 IPR001245 GO:0004672|GO:0006468
Lsi03g01118 723 ProSiteProfiles Protein kinase domain profile. 379 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01118 723 PANTHER OS01G0750732 PROTEIN 23 723 - -
Lsi03g01118 723 SUPERFAMILY Protein kinase-like (PK-like) 354 656 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02522 Lsi-Chr2:31660773 Lsi03g01118 Lsi-Chr3:21364216 1.00E-86 dispersed
Lsi03g01118 Lsi-Chr3:21364216 Lsi05g01067 Lsi-Chr5:18173193 7.06E-129 dispersed
Lsi04g00550 Lsi-Chr4:5048319 Lsi03g01118 Lsi-Chr3:21364216 8.06E-95 dispersed
Lsi08g00348 Lsi-Chr8:9539856 Lsi03g01118 Lsi-Chr3:21364216 7.32E-92 dispersed
Lsi08g01231 Lsi-Chr8:20775365 Lsi03g01118 Lsi-Chr3:21364216 6.71E-87 dispersed
Lsi10g01256 Lsi-Chr10:16795701 Lsi03g01118 Lsi-Chr3:21364216 1.79E-67 dispersed
Lsi03g01118 Lsi-Chr3:21364216 Lsi02g02938 Lsi-Chr2:35531292 1.61E-127 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83482 PF07714 PK_Tyr_Ser-Thr 1.00E-43 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01118 - - csv:101219278 1328.15