Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01124 ATGGAGGAGGAGAAGAAGAAGGAAGAGATTATAAAGATGGAGGATACTAGCACTAGCACCGGCGGCGGCGGCGGTGGCGGAGGAGATGGTGATGGGGTTTTCCCATTTTCCGATAACGTAATACCAAATGGATTCTTTGATTTTTCAGATGGTGAAAAATGCTCTGTTGGGTTCATGGAGTTGCTTGGTCTTAATCATTGTGAATTTAAGGATTATTGTTCTGAGGTTTTTAATCCTCCGGCCACCCCCAATTGTTCCTCCTCCGTCTCCTCCGCCTCTAGCGACGTTGTTAACGACGACGATCCACAACAACAACAACAACAACAGCAACACAATCCCACCACTAAACAATTGAAATTGAAAAAGAGGAAGGAGAAGAAAGAAAAGGAAGCAAGATTTGCATTCATGACAAAGAGTGAAGTCGATCATCTAGAAGATGGCTATCGATGGAGAAAGTACGGCCAAAAAGCTGTCAAAAACAGCCCTTTTCCTAGGAGTTATTACCGTTGCACTAGTGCAGCTTGTAATGTAAAGAAGAGAGTTGAACGATCTTCTGCTGATCCAACCGTTGTGGTGACCACCTACGAAGGTCAACACACTCATCCAAGCCCCATCCTATCTCGGTCCGCCTTAGCCATTGCCATTCCACCACCGCCCTCCACCGGTGGCCCAGGTGGAGGGTGTGTTGGCGTTGCAGCCATGCCATGGCTCAAAGCTACCAACAGCGCTCATGATGGAGACATTATTATTCCAGCATTGTCTCATCAATACTTTCAAAACTCGACCTACATCACTTCCCAAAATTTAGCCGTCAATTACAACCGAAACAACCACATTGGAGCGGCGAATGCAGCCGGAATCCTCCAGGAGAAACGGTTTTGCAACCAAAATGCTACATTTCTTGTAGACCATGGGCTGCTTCAAGATGTTGTTCCTCCACACATGCTGAAACAGGAGTGA 960 46.56 MEEEKKKEEIIKMEDTSTSTGGGGGGGGDGDGVFPFSDNVIPNGFFDFSDGEKCSVGFMELLGLNHCEFKDYCSEVFNPPATPNCSSSVSSASSDVVNDDDPQQQQQQQQHNPTTKQLKLKKRKEKKEKEARFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSAACNVKKRVERSSADPTVVVTTYEGQHTHPSPILSRSALAIAIPPPPSTGGPGGGCVGVAAMPWLKATNSAHDGDIIIPALSHQYFQNSTYITSQNLAVNYNRNNHIGAANAAGILQEKRFCNQNATFLVDHGLLQDVVPPHMLKQE 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 21462995 21470935 + Lsi03G011240.1 Lsi03g01124 658874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01124 319 Gene3D WRKY domain 128 205 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi03g01124 319 MobiDBLite consensus disorder prediction 84 115 - -
Lsi03g01124 319 Pfam WRKY DNA -binding domain 145 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi03g01124 319 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 73 312 - -
Lsi03g01124 319 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 73 312 IPR044810 GO:0003700
Lsi03g01124 319 SMART WRKY_cls 144 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi03g01124 319 ProSiteProfiles WRKY domain profile. 139 204 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi03g01124 319 MobiDBLite consensus disorder prediction 1 33 - -
Lsi03g01124 319 SUPERFAMILY WRKY DNA-binding domain 136 204 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi03g01124 319 MobiDBLite consensus disorder prediction 84 125 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01124 Lsi-Chr3:21462995 Lsi05g01411 Lsi-Chr5:22051870 6.14E-46 dispersed
Lsi07g00019 Lsi-Chr7:255094 Lsi03g01124 Lsi-Chr3:21462995 1.87E-24 transposed
Lsi07g00905 Lsi-Chr7:10414641 Lsi03g01124 Lsi-Chr3:21462995 2.67E-32 transposed
Lsi02g02490 Lsi-Chr2:31363690 Lsi03g01124 Lsi-Chr3:21462995 4.95E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24996 PF03106 WRKY 7.50E-27 CL0274 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01124 - - cmo:103489912 423.705